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[bioontology-support] [BioPortal] Feedback from vivekgopalan at gmail.com

Jennifer Leigh Vendetti vendetti at stanford.edu
Wed Sep 8 10:07:28 PDT 2021


Hello Vivek,

The http://sparql.bioontology.org/ site is a beta service we published a number of years ago, but haven’t had the resources to update and/or maintain with current ontology data.

Instead, please use our REST API, which we are actively maintaining, and accesses the most recent ontology data in BioPortal. The REST API is documented here:

https://data.bioontology.org/documentation

Instructions for getting an API Key are here:

https://bioportal.bioontology.org/help#Getting_an_API_key

We also have some examples of programmatic access in various languages in one of our GitHub repositories:

https://github.com/ncbo/ncbo_rest_sample_code

Kind regards,
Jennifer



On Sep 8, 2021, at 5:09 AM, support at bioontology.org<mailto:support at bioontology.org> wrote:


Name: vivekgopalan at gmail.com<mailto:vivekgopalan at gmail.com>

Email: vivekgopalan at gmail.com<mailto:vivekgopalan at gmail.com>

Location: http%3A%2F%2Fsparql.bioontology.org<http://2Fsparql.bioontology.org>%2F

Feedback:

http://sparql.bioontology.org/?outputformat=browse&kboption=mappings

The default "mapping" query is giving "Internal error, please contact administrator. Internal error" - 500 error. this is happening in the web and rest api.

Thanks
Vivek

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