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[bioontology-support] [BioPortal] Feedback from Alexander Diehl

Alexander Diehl addiehl at buffalo.edu
Tue Aug 30 09:45:38 PDT 2022


Hi Jennifer,

Thanks for your help. I will go ahead and do that.

Alex

From: Jennifer Leigh Vendetti <vendetti at stanford.edu>
Date: Tuesday, August 30, 2022 at 12:44 PM
To: support <support at bioontology.org>
Cc: Alexander Diehl <addiehl at buffalo.edu>
Subject: Re: [bioontology-support] [BioPortal] Feedback from Alexander Diehl

Hi Alexander,

BioPortal only handles one ontology per entry. You’re welcome to host cl-simple.owl as a separate entry from CL. In order to create a new entry:

1. Login to BioPortal (if you don’t have an account, you can create one here: https://bioportal.bioontology.org/accounts/new<https://nam12.safelinks.protection.outlook.com/?url=https%3A%2F%2Fbioportal.bioontology.org%2Faccounts%2Fnew&data=05%7C01%7Caddiehl%40buffalo.edu%7C0fbd34602fae4645a99f08da8aa6ddfe%7C96464a8af8ed40b199e25f6b50a20250%7C0%7C0%7C637974746543033957%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C3000%7C%7C%7C&sdata=yYQyXS7QrOivQ%2FZSAZl1pyHOqt7X%2Bkij%2FR9QRNma9O8%3D&reserved=0>)
2. Navigate to the Browse page (https://bioportal.bioontology.org/ontologies<https://nam12.safelinks.protection.outlook.com/?url=https%3A%2F%2Fbioportal.bioontology.org%2Fontologies&data=05%7C01%7Caddiehl%40buffalo.edu%7C0fbd34602fae4645a99f08da8aa6ddfe%7C96464a8af8ed40b199e25f6b50a20250%7C0%7C0%7C637974746543190180%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C3000%7C%7C%7C&sdata=WewzIxusBdAsu7pvDQOMwAfKxrqrGVfEjFmDoTPd3bA%3D&reserved=0>)
3. Click the Submit New Ontology button, and fill out the resulting forms.

Kind regards,
Jennifer



On Aug 30, 2022, at 7:32 AM, support at bioontology.org<mailto:support at bioontology.org> wrote:

Name: Alexander Diehl
Email: addiehl at buffalo.edu<mailto:addiehl at buffalo.edu>
Location: https%3A%2F%2Fbioportal.bioontology.org<https://nam12.safelinks.protection.outlook.com/?url=http%3A%2F%2F2fbioportal.bioontology.org%2F&data=05%7C01%7Caddiehl%40buffalo.edu%7C0fbd34602fae4645a99f08da8aa6ddfe%7C96464a8af8ed40b199e25f6b50a20250%7C0%7C0%7C637974746543190180%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C3000%7C%7C%7C&sdata=ax2K1N6KrapwQCcI6r5bs1GuFXJguA%2BAfVdzVxWYfqo%3D&reserved=0>%2Fontologies%2FCL

Feedback:
Ontology submission Question
I serve as the contact for the Cell Ontology (CL), which has been available on BioPortal for many years (thank you!). We have been contacted by a user of CL who accesses CL using a REDCap interface that relies on the BioPortal API. He is wondering if BioPortal would be willing to host a second version of CL, cl-simple.owl, which is a version of CL lacking reference to external ontology terms, which would make his search results more focused. Is it possible for BioPortal to host both cl.owl and cl-simple.owl, either as part of the same entry or perhaps as two separate entries in BioPortal?
Thanks,
Alexander Diehl

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