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[bioontology-support] NCBO Annotator

Jennifer Leigh Vendetti vendetti at
Mon Sep 12 10:57:58 PDT 2022

Hi Chuck,

If you decide you’re interested in a local installation, the guide for setting it up is here:

The virtual appliance distribution is referred to with a more generic name of “OntoPortal”.

Kind regards,

On Sep 12, 2022, at 10:47 AM, Timothy Redmond <tredmond at<mailto:tredmond at>> wrote:

From the perspective of security, probably running as a local sandboxed service is the only safe way.  I am not the right expert but I suspect that you'll have to run the entire BioPortal locally. Fortunately, modulo cost and load, this is probably not too difficult.


From: bioontology-support <bioontology-support-bounces at<mailto:bioontology-support-bounces at>> on behalf of Kahn, Charles E <Charles.Kahn at<mailto:Charles.Kahn at>>
Date: Monday, September 12, 2022 at 6:53 AM
To: support at<mailto:support at> <support at<mailto:support at>>
Subject: [bioontology-support] NCBO Annotator
Hi!  I’ve used Annotator for several years – it’s been very useful!

Our research group is interested to run Annotator (and try out Annotator+) on a corpus of radiology reports from our institution and others.  Given concerns about data that may contain PHI, do you have a version of Annotator that can be run on a local server?  If not, would you have any other suggestions?

Many thanks,

Charles E. Kahn, Jr., MD, MS, FACR, FACMI, FSIIM

Professor and Vice Chair of Radiology
Senior Fellow, Institute for Biomedical Informatics
Senior Fellow, Leonard Davis Institute of Health Economics
University of Pennsylvania
3400 Spruce Street, 1 Silverstein
Philadelphia, PA 19104

ckahn at<mailto:ckahn at>
T +1 (215) 662-3032  -  F +1 (215) 662-7011   -  M +1 (414) 429-5060

bioontology-support mailing list
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