<html><head></head><body bgcolor="#FFFFFF"><div>Good to know I'm not crazy.</div><div><br></div><div>Is there a fix?  </div><div><br></div><div><br></div><div>Jonathan</div><div><br></div><div><br><br>Sent from my iPhone.</div><div><br>On Jan 20, 2012, at 3:26 PM, "Paul R Alexander" <<a href="mailto:palexander@stanford.edu">palexander@stanford.edu</a>> wrote:<br><br></div><div></div><blockquote type="cite"><div>
  
    <meta content="text/html; charset=ISO-8859-1" http-equiv="Content-Type">
  
  
    Jonathan,<br>
    <br>
    I just tested with an instance of the Virtual Appliance and calling
    the /obs/annotate URL with the apikey parameter in the body should
    work fine. Including it in the URL as a query string parameter
    results in the same error you included below.<br>
    <br>
    Paul R Alexander<br>
    Web / UI Developer<br>
    NCBO BioPortal<br>
    Stanford Center for Biomedical Informatics Research<br>
    <br>
    <br>
    On 1/20/12 11:54 AM, Holt, Jonathan wrote:
    <blockquote cite="mid:14A16020-85DA-4323-A1CD-5B0DE75FA100@Vanderbilt.Edu" type="cite">
      <div>Trish,</div>
      <div><br>
      </div>
      <div><br>
      </div>
      I managed to get my VM image up and running using my own SSL. 
      <div>My issue really was with configuring VMware to do NAT and to
        handle the SSL properly thru my apache server.  </div>
      <div><br>
      </div>
      <div><br>
      </div>
      <div>Most services are working, except:
        <div><br>
        </div>
        <div><br>
        </div>
        <div>my rest service for annotation using my local APIKEY says:</div>
        <div><br>
        </div>
        <div><errorStatus></div>
        <div> 
          <accessedResource>/obs/annotator</accessedResource></div>
        <div>  <accessDate>2012-01-20 11:20:26.902
          PST</accessDate></div>
        <div>  <shortMessage>Forbidden</shortMessage></div>
        <div>  <longMessage>The API key you supplied is invalid.
          Please visit <a moz-do-not-send="true" href="http://rails-ui.example.org/account">http://rails-ui.example.org/account</a>
          to get your API key.</longMessage></div>
        <div>  <errorCode>403</errorCode></div>
        <div></errorStatus> </div>
        <div><br>
        </div>
        <div><br>
        </div>
        <div>at first I used the admin api key, then tried creating a
          new one. (these are both created locally on my image)</div>
        <div><br>
        </div>
        <div><br>
        </div>
        <div>I've also restarted the ncbo services and rebooted my
          image. </div>
        <div><br>
        </div>
        <div>Pointing the same script at your rest service hosted at
          stanford and using the apikey for your server works fine. </div>
        <div><br>
        </div>
        <div>my other rest services work fine locally, autocompletion,
          for instance.  </div>
        <div><br>
        </div>
        <div><br>
        </div>
        <div>Is there some other configuration I need to perform to get
          the annotation rest service up and running with a locally
          generated apikey?</div>
        <div><br>
        </div>
        <div>I also tried populating the ontology to the annotation
          service but again it gives the same error above. </div>
        <div><br>
        </div>
        <div><br>
        </div>
        <div>I haven't been able to find any information on the wiki. </div>
        <div><br>
        </div>
        <div><br>
        </div>
        <div>Thanks,</div>
        <div><br>
        </div>
        <div>Jonathan </div>
        <div><br>
        </div>
        <div><br>
        </div>
        <div><br>
        </div>
        <div><br>
          <div apple-content-edited="true">
            <div>
              <div>.................................</div>
              <div>Jonathan Holt, DO</div>
              <div><br>
              </div>
              <div>
                <div style="margin-top: 0in; margin-right: 0in;
                  margin-bottom: 0.0001pt; margin-left: 0in; font-size:
                  11pt; font-family: Calibri, sans-serif; "><font class="Apple-style-span" size="3" color="#7F7F7F"><span class="Apple-style-span" style="font-size: 12px; ">National
                      Library of Medicine Post-Doctoral Fellow</span></font></div>
                <div style="margin-top: 0in; margin-right: 0in;
                  margin-bottom: 0.0001pt; margin-left: 0in; font-size:
                  11pt; font-family: Calibri, sans-serif; "><span style="font-size: 9pt; color: rgb(127, 127, 127); ">Department
                    of Biomedical Informatics<o:p></o:p></span></div>
                <div style="margin-top: 0in; margin-right: 0in;
                  margin-bottom: 0.0001pt; margin-left: 0in; font-size:
                  11pt; font-family: Calibri, sans-serif; "><span style="font-size: 9pt; color: rgb(127, 127, 127); ">Vanderbilt
                    University Medical Center<o:p></o:p></span></div>
                <div style="margin-top: 0in; margin-right: 0in;
                  margin-bottom: 0.0001pt; margin-left: 0in; font-size:
                  11pt; font-family: Calibri, sans-serif; "><font class="Apple-style-span" size="3" color="#7F7F7F"><span class="Apple-style-span" style="font-size: 12px; ">2209
                      Garland Avenue, 400 Eskind Library</span></font></div>
                <div style="margin-top: 0in; margin-right: 0in;
                  margin-bottom: 0.0001pt; margin-left: 0in; font-size:
                  11pt; font-family: Calibri, sans-serif; "><span class="Apple-style-span" style="font-size: 12px;
                    color: rgb(127, 127, 127); ">Nashville, TN 
                    37232-8340</span></div>
                <div style="margin-top: 0in; margin-right: 0in;
                  margin-bottom: 0.0001pt; margin-left: 0in; font-size:
                  11pt; font-family: Calibri, sans-serif; "><font class="Apple-style-span" size="3" color="#7F7F7F"><span class="Apple-style-span" style="font-size: 12px; ">P
                      650-450-8102</span></font></div>
                <div style="margin-top: 0in; margin-right: 0in;
                  margin-bottom: 0.0001pt; margin-left: 0in; font-size:
                  11pt; font-family: Calibri, sans-serif; "><font class="Apple-style-span" size="3" color="#7F7F7F"><span class="Apple-style-span" style="font-size: 12px; ">F
                      615-936-1427</span></font></div>
                <div style="margin-top: 0in; margin-right: 0in;
                  margin-bottom: 0.0001pt; margin-left: 0in; font-size:
                  11pt; font-family: Calibri, sans-serif; "><font class="Apple-style-span" size="3" color="#7F7F7F"><span class="Apple-style-span" style="font-size: 12px; "><br>
                    </span></font></div>
                <div style="margin-top: 0in; margin-right: 0in;
                  margin-bottom: 0.0001pt; margin-left: 0in; font-size:
                  11pt; font-family: Calibri, sans-serif; "><font class="Apple-style-span" size="3" color="#7F7F7F"><span class="Apple-style-span" style="font-size: 12px; "><a moz-do-not-send="true" href="mailto:jonathan.holt@vanderbilt.edu">jonathan.holt@vanderbilt.edu</a></span></font></div>
                <div style="margin-top: 0in; margin-right: 0in;
                  margin-bottom: 0.0001pt; margin-left: 0in; font-size:
                  11pt; font-family: Calibri, sans-serif; "><font class="Apple-style-span" size="3" color="#7F7F7F"><span class="Apple-style-span" style="font-size: 12px; "><a moz-do-not-send="true" href="http://dbmi.mc.vanderbilt.edu/people/holt.html">http://dbmi.mc.vanderbilt.edu/people/holt.html</a></span></font></div>
              </div>
            </div>
            <div><br>
            </div>
            <br class="Apple-interchange-newline">
          </div>
          <br>
          <div>
            <div>On Jan 18, 2012, at 3:43 PM, Trish Whetzel wrote:</div>
            <br class="Apple-interchange-newline">
            <blockquote type="cite">
              <div style="word-wrap: break-word; -webkit-nbsp-mode:
                space; -webkit-line-break: after-white-space; ">
                <div>Thanks, I've added that back into the tracker. </div>
                <div><br>
                </div>
                <div>Trish </div>
                <div><br>
                </div>
                <br>
                <div>
                  <div>On Jan 18, 2012, at 1:09 PM, Holt, Jonathan
                    wrote:</div>
                  <br class="Apple-interchange-newline">
                  <blockquote type="cite">
                    <div style="word-wrap: break-word;
                      -webkit-nbsp-mode: space; -webkit-line-break:
                      after-white-space; ">
                      <div>since my site is secure with SSL, and the
                        bioportal rest service is not the user get a
                        warning (see attached). </div>
                      <div><br>
                      </div>
                      <div>Since I am asking then to put in PHI, I am
                        worried that my users will freak out, affecting
                        my adoption and hence my study.  </div>
                      <div><br>
                      </div>
                      <div><span><Screen Shot 2012-01-18 at 10.32.57
                          AM.png></span></div>
                      <div><br>
                      </div>
                      <div><br>
                      </div>
                      <div><br>
                      </div>
                      <div>The VM image is great, I was able to convert
                        it to a VMX and got it up and running pretty
                        quickly.  </div>
                      <div>Configuring it challenging and time
                        consuming. </div>
                      <div><br>
                      </div>
                      <div><br>
                      </div>
                      <div>Thanks,</div>
                      <div><br>
                      </div>
                      <div><br>
                      </div>
                      <div>jonathan</div>
                      <div><br>
                      </div>
                      <div><br>
                      </div>
                      <br>
                      <div apple-content-edited="true">
                        <div>
                          <div>.................................</div>
                          <div>Jonathan Holt, DO</div>
                          <div><br>
                          </div>
                          <div>
                            <div style="margin-top: 0in; margin-right:
                              0in; margin-bottom: 0.0001pt; margin-left:
                              0in; font-size: 11pt; font-family:
                              Calibri, sans-serif; "><font class="Apple-style-span" size="3" color="#7F7F7F"><span class="Apple-style-span" style="font-size: 12px; ">National
                                  Library of Medicine Post-Doctoral
                                  Fellow</span></font></div>
                            <div style="margin-top: 0in; margin-right:
                              0in; margin-bottom: 0.0001pt; margin-left:
                              0in; font-size: 11pt; font-family:
                              Calibri, sans-serif; "><span style="font-size: 9pt; color: rgb(127,
                                127, 127); ">Department of Biomedical
                                Informatics<o:p></o:p></span></div>
                            <div style="margin-top: 0in; margin-right:
                              0in; margin-bottom: 0.0001pt; margin-left:
                              0in; font-size: 11pt; font-family:
                              Calibri, sans-serif; "><span style="font-size: 9pt; color: rgb(127,
                                127, 127); ">Vanderbilt University
                                Medical Center<o:p></o:p></span></div>
                            <div style="margin-top: 0in; margin-right:
                              0in; margin-bottom: 0.0001pt; margin-left:
                              0in; font-size: 11pt; font-family:
                              Calibri, sans-serif; "><font class="Apple-style-span" size="3" color="#7F7F7F"><span class="Apple-style-span" style="font-size: 12px; ">2209 Garland
                                  Avenue, 400 Eskind Library</span></font></div>
                            <div style="margin-top: 0in; margin-right:
                              0in; margin-bottom: 0.0001pt; margin-left:
                              0in; font-size: 11pt; font-family:
                              Calibri, sans-serif; "><span class="Apple-style-span" style="font-size: 12px; color: rgb(127,
                                127, 127); ">Nashville, TN  37232-8340</span></div>
                            <div style="margin-top: 0in; margin-right:
                              0in; margin-bottom: 0.0001pt; margin-left:
                              0in; font-size: 11pt; font-family:
                              Calibri, sans-serif; "><font class="Apple-style-span" size="3" color="#7F7F7F"><span class="Apple-style-span" style="font-size: 12px; ">P
                                  650-450-8102</span></font></div>
                            <div style="margin-top: 0in; margin-right:
                              0in; margin-bottom: 0.0001pt; margin-left:
                              0in; font-size: 11pt; font-family:
                              Calibri, sans-serif; "><font class="Apple-style-span" size="3" color="#7F7F7F"><span class="Apple-style-span" style="font-size: 12px; ">F
                                  615-936-1427</span></font></div>
                            <div style="margin-top: 0in; margin-right:
                              0in; margin-bottom: 0.0001pt; margin-left:
                              0in; font-size: 11pt; font-family:
                              Calibri, sans-serif; "><font class="Apple-style-span" size="3" color="#7F7F7F"><span class="Apple-style-span" style="font-size: 12px; "><br>
                                </span></font></div>
                            <div style="margin-top: 0in; margin-right:
                              0in; margin-bottom: 0.0001pt; margin-left:
                              0in; font-size: 11pt; font-family:
                              Calibri, sans-serif; "><font class="Apple-style-span" size="3" color="#7F7F7F"><span class="Apple-style-span" style="font-size: 12px; "><a moz-do-not-send="true" href="mailto:jonathan.holt@vanderbilt.edu">jonathan.holt@vanderbilt.edu</a></span></font></div>
                            <div style="margin-top: 0in; margin-right:
                              0in; margin-bottom: 0.0001pt; margin-left:
                              0in; font-size: 11pt; font-family:
                              Calibri, sans-serif; "><font class="Apple-style-span" size="3" color="#7F7F7F"><span class="Apple-style-span" style="font-size: 12px; "><a moz-do-not-send="true" href="http://dbmi.mc.vanderbilt.edu/people/holt.html">http://dbmi.mc.vanderbilt.edu/people/holt.html</a></span></font></div>
                          </div>
                        </div>
                        <div><br>
                        </div>
                        <br class="Apple-interchange-newline">
                      </div>
                      <br>
                      <div>
                        <div>On Jan 18, 2012, at 10:21 AM, Trish Whetzel
                          wrote:</div>
                        <br class="Apple-interchange-newline">
                        <blockquote type="cite">
                          <div style="word-wrap: break-word;
                            -webkit-nbsp-mode: space;
                            -webkit-line-break: after-white-space; ">
                            <div>Hi Jonathan,</div>
                            <div><br>
                            </div>
                            <div>After sending the VM Appliance link, I
                              did not pursue this since it seemed to no
                              longer be an issue. Can you tell me what
                              actions are resulting in warnings of
                              insecure content? I'll re-activate the bug
                              report and add this information. </div>
                            <div><br>
                            </div>
                            <div>Also, can you tell me a bit more about
                              why the VM is not working well enough for
                              the tasks you are working on?</div>
                            <div><br>
                            </div>
                            <div>Thank you,</div>
                            <div>Trish </div>
                            <div><br>
                            </div>
                            <br>
                            <div>
                              <div>On Jan 17, 2012, at 3:20 PM, Holt,
                                Jonathan wrote:</div>
                              <br class="Apple-interchange-newline">
                              <blockquote type="cite">
                                <div style="word-wrap: break-word;
                                  -webkit-nbsp-mode: space;
                                  -webkit-line-break: after-white-space;
                                  ">
                                  <div>Trish, </div>
                                  <div><br>
                                  </div>
                                  <div>any word on updating the SSL for
                                    the bioportal rest service? </div>
                                  <div><br>
                                  </div>
                                  <div>I would even consider paying for
                                    it as I know that Stanford is hard
                                    up for cash these days. </div>
                                  <div><br>
                                  </div>
                                  <div>I got the virtual image running,
                                    but it isn't working as well as I
                                    would have liked. </div>
                                  <div><br>
                                  </div>
                                  <div><br>
                                  </div>
                                  <div><br>
                                  </div>
                                  <div>Thanks,</div>
                                  <div><br>
                                  </div>
                                  <div>jonathan </div>
                                  <div><br>
                                  </div>
                                  <div><br>
                                  </div>
                                  <div><br>
                                  </div>
                                  <br>
                                  <div>
                                    <span class="Apple-style-span" style="border-collapse: separate;
                                      font-family: Helvetica;
                                      font-style: normal; font-variant:
                                      normal; font-weight: normal;
                                      letter-spacing: normal;
                                      line-height: normal; orphans: 2;
                                      text-indent: 0px; text-transform:
                                      none; white-space: normal; widows:
                                      2; word-spacing: 0px;
                                      -webkit-border-horizontal-spacing:
                                      0px;
                                      -webkit-border-vertical-spacing:
                                      0px;
                                      -webkit-text-decorations-in-effect:
                                      none; -webkit-text-size-adjust:
                                      auto; -webkit-text-stroke-width:
                                      0px; font-size: medium; ">
                                      <div>
                                        <div>.................................</div>
                                        <div>Jonathan Holt, DO</div>
                                        <div><br>
                                        </div>
                                        <div>
                                          <div style="margin-top: 0in;
                                            margin-right: 0in;
                                            margin-bottom: 0.0001pt;
                                            margin-left: 0in; font-size:
                                            11pt; font-family: Calibri,
                                            sans-serif; "><font class="Apple-style-span" size="3" color="#7F7F7F"><span class="Apple-style-span" style="font-size: 12px;
                                                ">National Library of
                                                Medicine Post-Doctoral
                                                Fellow</span></font></div>
                                          <div style="margin-top: 0in;
                                            margin-right: 0in;
                                            margin-bottom: 0.0001pt;
                                            margin-left: 0in; font-size:
                                            11pt; font-family: Calibri,
                                            sans-serif; "><span style="font-size: 9pt;
                                              color: rgb(127, 127, 127);
                                              ">Department of Biomedical
                                              Informatics<o:p></o:p></span></div>
                                          <div style="margin-top: 0in;
                                            margin-right: 0in;
                                            margin-bottom: 0.0001pt;
                                            margin-left: 0in; font-size:
                                            11pt; font-family: Calibri,
                                            sans-serif; "><span style="font-size: 9pt;
                                              color: rgb(127, 127, 127);
                                              ">Vanderbilt University
                                              Medical Center<o:p></o:p></span></div>
                                          <div style="margin-top: 0in;
                                            margin-right: 0in;
                                            margin-bottom: 0.0001pt;
                                            margin-left: 0in; font-size:
                                            11pt; font-family: Calibri,
                                            sans-serif; "><font class="Apple-style-span" size="3" color="#7F7F7F"><span class="Apple-style-span" style="font-size: 12px;
                                                ">2209 Garland Avenue,
                                                400 Eskind Library</span></font></div>
                                          <div style="margin-top: 0in;
                                            margin-right: 0in;
                                            margin-bottom: 0.0001pt;
                                            margin-left: 0in; font-size:
                                            11pt; font-family: Calibri,
                                            sans-serif; "><span class="Apple-style-span" style="font-size: 12px;
                                              color: rgb(127, 127, 127);
                                              ">Nashville, TN 
                                              37232-8340</span></div>
                                          <div style="margin-top: 0in;
                                            margin-right: 0in;
                                            margin-bottom: 0.0001pt;
                                            margin-left: 0in; font-size:
                                            11pt; font-family: Calibri,
                                            sans-serif; "><font class="Apple-style-span" size="3" color="#7F7F7F"><span class="Apple-style-span" style="font-size: 12px;
                                                ">P 650-450-8102</span></font></div>
                                          <div style="margin-top: 0in;
                                            margin-right: 0in;
                                            margin-bottom: 0.0001pt;
                                            margin-left: 0in; font-size:
                                            11pt; font-family: Calibri,
                                            sans-serif; "><font class="Apple-style-span" size="3" color="#7F7F7F"><span class="Apple-style-span" style="font-size: 12px;
                                                ">F 615-936-1427</span></font></div>
                                          <div style="margin-top: 0in;
                                            margin-right: 0in;
                                            margin-bottom: 0.0001pt;
                                            margin-left: 0in; font-size:
                                            11pt; font-family: Calibri,
                                            sans-serif; "><font class="Apple-style-span" size="3" color="#7F7F7F"><span class="Apple-style-span" style="font-size: 12px;
                                                "><br>
                                              </span></font></div>
                                          <div style="margin-top: 0in;
                                            margin-right: 0in;
                                            margin-bottom: 0.0001pt;
                                            margin-left: 0in; font-size:
                                            11pt; font-family: Calibri,
                                            sans-serif; "><font class="Apple-style-span" size="3" color="#7F7F7F"><span class="Apple-style-span" style="font-size: 12px;
                                                "><a moz-do-not-send="true" href="mailto:jonathan.holt@vanderbilt.edu">jonathan.holt@vanderbilt.edu</a></span></font></div>
                                          <div style="margin-top: 0in;
                                            margin-right: 0in;
                                            margin-bottom: 0.0001pt;
                                            margin-left: 0in; font-size:
                                            11pt; font-family: Calibri,
                                            sans-serif; "><font class="Apple-style-span" size="3" color="#7F7F7F"><span class="Apple-style-span" style="font-size: 12px;
                                                "><a moz-do-not-send="true" href="http://dbmi.mc.vanderbilt.edu/people/holt.html">http://dbmi.mc.vanderbilt.edu/people/holt.html</a></span></font></div>
                                        </div>
                                      </div>
                                      <div><br>
                                      </div>
                                    </span><br class="Apple-interchange-newline">
                                  </div>
                                  <br>
                                </div>
                              </blockquote>
                            </div>
                            <br>
                            <br>
                          </div>
                        </blockquote>
                      </div>
                      <br>
                    </div>
                  </blockquote>
                </div>
                <br>
                <div>
                  <span class="Apple-style-span" style="border-collapse:
                    separate; font-family: Arial; font-style: normal;
                    font-variant: normal; font-weight: normal;
                    letter-spacing: normal; line-height: normal;
                    orphans: 2; text-align: -webkit-auto; text-indent:
                    0px; text-transform: none; white-space: normal;
                    widows: 2; word-spacing: 0px;
                    -webkit-border-horizontal-spacing: 0px;
                    -webkit-border-vertical-spacing: 0px;
                    -webkit-text-decorations-in-effect: none;
                    -webkit-text-size-adjust: auto;
                    -webkit-text-stroke-width: 0px; font-size: medium; "><span class="Apple-style-span" style="border-collapse:
                      separate; font-variant: normal; letter-spacing:
                      normal; line-height: normal; orphans: 2;
                      text-align: -webkit-auto; text-indent: 0px;
                      text-transform: none; white-space: normal; widows:
                      2; word-spacing: 0px;
                      -webkit-border-horizontal-spacing: 0px;
                      -webkit-border-vertical-spacing: 0px;
                      -webkit-text-decorations-in-effect: none;
                      -webkit-text-size-adjust: auto;
                      -webkit-text-stroke-width: 0px; font-size: 12px; ">
                      <div style="word-wrap: break-word;
                        -webkit-nbsp-mode: space; -webkit-line-break:
                        after-white-space; ">
                        <div>
                          <div>Trish Whetzel, PhD</div>
                          <div>Outreach Coordinator</div>
                          <div>The National Center for Biomedical
                            Ontology</div>
                          <div>Ph: 650-721-2378</div>
                          <div><a moz-do-not-send="true" href="http://www.bioontology.org/">http://www.bioontology.org</a></div>
                          <div><br>
                          </div>
                          <div>Now on Twitter: <a moz-do-not-send="true" href="http://twitter.com/#%21/bioontology">http://twitter.com/#!/bioontology</a></div>
                          <div>and "Like" us on Facebook: <a moz-do-not-send="true" href="http://www.facebook.com/pages/National-Center-for-Biomedical-Ontology/127444774011153">http://www.facebook.com/pages/National-Center-for-Biomedical-Ontology/127444774011153</a></div>
                        </div>
                      </div>
                    </span></span>
                </div>
                <br>
              </div>
            </blockquote>
          </div>
          <br>
        </div>
      </div>
      <br>
      <fieldset class="mimeAttachmentHeader"></fieldset>
      <br>
      <pre wrap="">_______________________________________________
bioontology-support mailing list
<a class="moz-txt-link-abbreviated" href="mailto:bioontology-support@lists.stanford.edu">bioontology-support@lists.stanford.edu</a>
<a class="moz-txt-link-freetext" href="https://mailman.stanford.edu/mailman/listinfo/bioontology-support">https://mailman.stanford.edu/mailman/listinfo/bioontology-support</a>
</pre>
    </blockquote>
  

</div></blockquote></body></html>