<html>
<head>
<meta content="text/html; charset=ISO-8859-1"
http-equiv="Content-Type">
</head>
<body bgcolor="#FFFFFF" text="#000000">
I seem to be having ongoing problems with the TO parsing. I have
not been able to do a manual upload since Friday, so I changed it
the back to doing the autoload from the url. <br>
We really need to be able to have it up for today's work though, so
I am attaching the obo file and hoping someone there could update it
on the site,<br>
<br>
Thanks, Laurel<br>
<br>
On 4/26/12 11:16 AM, Trish Whetzel wrote:
<blockquote
cite="mid:778FA07F-125A-4C79-AB16-28087938F4E7@stanford.edu"
type="cite">
<div>It looks like the URL for the file location was for the html
marked up version:</div>
<div><a moz-do-not-send="true"
href="http://palea.cgrb.oregonstate.edu/viewsvn/Poc/trunk/ontology/collaborators_ontology/gramene/traits/trait.obo?view=markup">http://palea.cgrb.oregonstate.edu/viewsvn/Poc/trunk/ontology/collaborators_ontology/gramene/traits/trait.obo?view=markup</a></div>
<div><br>
</div>
<div>versus for the text file:</div>
<div><a moz-do-not-send="true"
href="http://palea.cgrb.oregonstate.edu/viewsvn/Poc/trunk/ontology/collaborators_ontology/gramene/traits/trait.obo?view=co">http://palea.cgrb.oregonstate.edu/viewsvn/Poc/trunk/ontology/collaborators_ontology/gramene/traits/trait.obo?view=co</a></div>
<div><br>
</div>
<div>I can update the URL if you like,</div>
<div>Trish </div>
<div><br>
</div>
<br>
<div>
<div>On Apr 26, 2012, at 2:05 PM, Trish Whetzel wrote:</div>
<br class="Apple-interchange-newline">
<blockquote type="cite">
<div style="word-wrap: break-word; -webkit-nbsp-mode: space;
-webkit-line-break: after-white-space; ">
<div>Hi Laurel, </div>
<div><br>
</div>
<div>I'll take a look at this.</div>
<div><br>
</div>
<div>Best, </div>
<div>Trish </div>
<div><br>
</div>
<br>
<div>
<div>On Apr 26, 2012, at 2:01 PM, Laurel Cooper wrote:</div>
<br class="Apple-interchange-newline">
<blockquote type="cite">
<meta http-equiv="content-type" content="text/html;
charset=ISO-8859-1">
<div bgcolor="#FFFFFF" text="#000000"> <br>
<br>
-------- Original Message --------
<table class="moz-email-headers-table" border="0"
cellpadding="0" cellspacing="0">
<tbody>
<tr>
<th align="RIGHT" nowrap="nowrap"
valign="BASELINE">Subject: </th>
<td>parsing error- TO</td>
</tr>
<tr>
<th align="RIGHT" nowrap="nowrap"
valign="BASELINE">Date: </th>
<td>Thu, 26 Apr 2012 10:56:29 -0700</td>
</tr>
<tr>
<th align="RIGHT" nowrap="nowrap"
valign="BASELINE">From: </th>
<td>Laurel Cooper <a moz-do-not-send="true"
class="moz-txt-link-rfc2396E"
href="mailto:cooperl@science.oregonstate.edu"><cooperl@science.oregonstate.edu></a></td>
</tr>
<tr>
<th align="RIGHT" nowrap="nowrap"
valign="BASELINE">To: </th>
<td>Trish Whetzel <a moz-do-not-send="true"
class="moz-txt-link-rfc2396E"
href="mailto:whetzel@stanford.edu"><whetzel@stanford.edu></a></td>
</tr>
</tbody>
</table>
<br>
<br>
<pre>The TO parsing failed this am, do you know why? Or maybe you an direct
me to someone else who can help,
Thanks,
Laurel
--
**********************************************************
Laurel (Lol) Cooper, PhD
Coordinator, Plant Ontology Consortium
Dept. of Botany and Plant Pathology
Rm 3086, Cordley Hall
Oregon State University
Corvallis, OR 97331
Web: <a moz-do-not-send="true" class="moz-txt-link-abbreviated" href="http://www.plantontology.org/">www.plantontology.org</a>
Phone: 541-737-5272
Fax: 541-737-3573
Skype: cooperlol910
***********************************************************
</pre>
</div>
_______________________________________________<br>
bioontology-support mailing list<br>
<a moz-do-not-send="true"
href="mailto:bioontology-support@lists.stanford.edu">bioontology-support@lists.stanford.edu</a><br>
<a moz-do-not-send="true"
href="https://mailman.stanford.edu/mailman/listinfo/bioontology-support">https://mailman.stanford.edu/mailman/listinfo/bioontology-support</a><br>
</blockquote>
</div>
<br>
<div>
<div style="word-wrap: break-word; -webkit-nbsp-mode:
space; -webkit-line-break: after-white-space; ">
<div style="word-wrap: break-word; -webkit-nbsp-mode:
space; -webkit-line-break: after-white-space; "><span
class="Apple-style-span" style="orphans: 2;
text-align: -webkit-auto; text-indent: 0px; widows:
2; -webkit-text-decorations-in-effect: none; ">
<div style="word-wrap: break-word;
-webkit-nbsp-mode: space; -webkit-line-break:
after-white-space; "><span
class="Apple-style-span" style="orphans: 2;
text-align: -webkit-auto; text-indent: 0px;
widows: 2; -webkit-text-decorations-in-effect:
none; ">
<div style="word-wrap: break-word;
-webkit-nbsp-mode: space; -webkit-line-break:
after-white-space; ">
<div>
<div style="border-collapse: separate;
color: rgb(0, 0, 0); font-family: Arial;
font-size: 12px; font-style: normal;
font-variant: normal; font-weight: normal;
letter-spacing: normal; line-height:
normal; text-transform: none; white-space:
normal; word-spacing: 0px;
-webkit-border-horizontal-spacing: 0px;
-webkit-border-vertical-spacing: 0px;
-webkit-text-size-adjust: auto;
-webkit-text-stroke-width: 0px; ">Trish
Whetzel, PhD</div>
<div style="border-collapse: separate;
color: rgb(0, 0, 0); font-family: Arial;
font-size: 12px; font-style: normal;
font-variant: normal; font-weight: normal;
letter-spacing: normal; line-height:
normal; text-transform: none; white-space:
normal; word-spacing: 0px;
-webkit-border-horizontal-spacing: 0px;
-webkit-border-vertical-spacing: 0px;
-webkit-text-size-adjust: auto;
-webkit-text-stroke-width: 0px; ">Outreach
Coordinator</div>
<div style="border-collapse: separate;
color: rgb(0, 0, 0); font-family: Arial;
font-size: 12px; font-style: normal;
font-variant: normal; font-weight: normal;
letter-spacing: normal; line-height:
normal; text-transform: none; white-space:
normal; word-spacing: 0px;
-webkit-border-horizontal-spacing: 0px;
-webkit-border-vertical-spacing: 0px;
-webkit-text-size-adjust: auto;
-webkit-text-stroke-width: 0px; ">The
National Center for Biomedical Ontology</div>
<div style="border-collapse: separate;
color: rgb(0, 0, 0); font-family: Arial;
font-size: 12px; font-style: normal;
font-variant: normal; font-weight: normal;
letter-spacing: normal; line-height:
normal; text-transform: none; white-space:
normal; word-spacing: 0px;
-webkit-border-horizontal-spacing: 0px;
-webkit-border-vertical-spacing: 0px;
-webkit-text-size-adjust: auto;
-webkit-text-stroke-width: 0px; ">Ph:
650-721-2378</div>
<div style="border-collapse: separate;
color: rgb(0, 0, 0); font-family: Arial;
font-size: 12px; font-style: normal;
font-variant: normal; font-weight: normal;
letter-spacing: normal; line-height:
normal; text-transform: none; white-space:
normal; word-spacing: 0px;
-webkit-border-horizontal-spacing: 0px;
-webkit-border-vertical-spacing: 0px;
-webkit-text-size-adjust: auto;
-webkit-text-stroke-width: 0px; "><a
moz-do-not-send="true"
href="http://www.bioontology.org/">http://www.bioontology.org</a></div>
<div style="border-collapse: separate;
color: rgb(0, 0, 0); font-family: Arial;
font-size: 12px; font-style: normal;
font-variant: normal; font-weight: normal;
letter-spacing: normal; line-height:
normal; text-transform: none; white-space:
normal; word-spacing: 0px;
-webkit-border-horizontal-spacing: 0px;
-webkit-border-vertical-spacing: 0px;
-webkit-text-size-adjust: auto;
-webkit-text-stroke-width: 0px; "><br>
</div>
<div>
<div>
<div><span class="Apple-style-span"
style="font-size: 12px; ">"Like"
NCBO on Facebook: <a
moz-do-not-send="true"
href="http://on.fb.me/bioontology">http://on.fb.me/bioontology</a></span></div>
<div><span class="Apple-style-span"
style="font-size: 12px; "><br>
</span></div>
<div><span class="Apple-style-span"
style="font-size: 12px; ">Follow
NCBO on Twitter: <a
moz-do-not-send="true"
href="http://twitter.com/#%21/bioontology">http://twitter.com/#!/bioontology</a></span></div>
<div><span class="Apple-style-span"
style="font-size: 12px; "><br>
</span></div>
<div><span class="Apple-style-span"
style="font-size: 12px; ">Join in
Discussions on LinkedIn: <a
moz-do-not-send="true"
href="http://linkd.in/ncbo-group">http://linkd.in/ncbo-group</a></span></div>
</div>
</div>
</div>
</div>
</span></div>
</span></div>
</div>
</div>
<br>
</div>
_______________________________________________<br>
bioontology-support mailing list<br>
<a moz-do-not-send="true"
href="mailto:bioontology-support@lists.stanford.edu">bioontology-support@lists.stanford.edu</a><br>
<a class="moz-txt-link-freetext" href="https://mailman.stanford.edu/mailman/listinfo/bioontology-support">https://mailman.stanford.edu/mailman/listinfo/bioontology-support</a><br>
</blockquote>
</div>
<br>
<div>
<span class="Apple-style-span" style="border-collapse: separate;
color: rgb(0, 0, 0); font-family: Arial; font-style: normal;
font-variant: normal; font-weight: normal; letter-spacing:
normal; line-height: normal; orphans: 2; text-align:
-webkit-auto; text-indent: 0px; text-transform: none;
white-space: normal; widows: 2; word-spacing: 0px;
-webkit-border-horizontal-spacing: 0px;
-webkit-border-vertical-spacing: 0px;
-webkit-text-decorations-in-effect: none;
-webkit-text-size-adjust: auto; -webkit-text-stroke-width:
0px; font-size: medium; "><span class="Apple-style-span"
style="orphans: 2; text-align: -webkit-auto; text-indent:
0px; widows: 2; -webkit-text-decorations-in-effect: none; ">
<div style="word-wrap: break-word; -webkit-nbsp-mode: space;
-webkit-line-break: after-white-space; "><span
class="Apple-style-span" style="orphans: 2; text-align:
-webkit-auto; text-indent: 0px; widows: 2;
-webkit-text-decorations-in-effect: none; ">
<div style="word-wrap: break-word; -webkit-nbsp-mode:
space; -webkit-line-break: after-white-space; "><span
class="Apple-style-span" style="orphans: 2;
text-align: -webkit-auto; text-indent: 0px; widows:
2; -webkit-text-decorations-in-effect: none; ">
<div style="word-wrap: break-word;
-webkit-nbsp-mode: space; -webkit-line-break:
after-white-space; "><span
class="Apple-style-span" style="orphans: 2;
text-align: -webkit-auto; text-indent: 0px;
widows: 2; -webkit-text-decorations-in-effect:
none; ">
<div style="word-wrap: break-word;
-webkit-nbsp-mode: space; -webkit-line-break:
after-white-space; ">
<div>
<div style="border-collapse: separate;
color: rgb(0, 0, 0); font-family: Arial;
font-size: 12px; font-style: normal;
font-variant: normal; font-weight: normal;
letter-spacing: normal; line-height:
normal; text-transform: none; white-space:
normal; word-spacing: 0px;
-webkit-border-horizontal-spacing: 0px;
-webkit-border-vertical-spacing: 0px;
-webkit-text-size-adjust: auto;
-webkit-text-stroke-width: 0px; ">Trish
Whetzel, PhD</div>
<div style="border-collapse: separate;
color: rgb(0, 0, 0); font-family: Arial;
font-size: 12px; font-style: normal;
font-variant: normal; font-weight: normal;
letter-spacing: normal; line-height:
normal; text-transform: none; white-space:
normal; word-spacing: 0px;
-webkit-border-horizontal-spacing: 0px;
-webkit-border-vertical-spacing: 0px;
-webkit-text-size-adjust: auto;
-webkit-text-stroke-width: 0px; ">Outreach
Coordinator</div>
<div style="border-collapse: separate;
color: rgb(0, 0, 0); font-family: Arial;
font-size: 12px; font-style: normal;
font-variant: normal; font-weight: normal;
letter-spacing: normal; line-height:
normal; text-transform: none; white-space:
normal; word-spacing: 0px;
-webkit-border-horizontal-spacing: 0px;
-webkit-border-vertical-spacing: 0px;
-webkit-text-size-adjust: auto;
-webkit-text-stroke-width: 0px; ">The
National Center for Biomedical Ontology</div>
<div style="border-collapse: separate;
color: rgb(0, 0, 0); font-family: Arial;
font-size: 12px; font-style: normal;
font-variant: normal; font-weight: normal;
letter-spacing: normal; line-height:
normal; text-transform: none; white-space:
normal; word-spacing: 0px;
-webkit-border-horizontal-spacing: 0px;
-webkit-border-vertical-spacing: 0px;
-webkit-text-size-adjust: auto;
-webkit-text-stroke-width: 0px; ">Ph:
650-721-2378</div>
<div style="border-collapse: separate;
color: rgb(0, 0, 0); font-family: Arial;
font-size: 12px; font-style: normal;
font-variant: normal; font-weight: normal;
letter-spacing: normal; line-height:
normal; text-transform: none; white-space:
normal; word-spacing: 0px;
-webkit-border-horizontal-spacing: 0px;
-webkit-border-vertical-spacing: 0px;
-webkit-text-size-adjust: auto;
-webkit-text-stroke-width: 0px; "><a
moz-do-not-send="true"
href="http://www.bioontology.org">http://www.bioontology.org</a></div>
<div style="border-collapse: separate;
color: rgb(0, 0, 0); font-family: Arial;
font-size: 12px; font-style: normal;
font-variant: normal; font-weight: normal;
letter-spacing: normal; line-height:
normal; text-transform: none; white-space:
normal; word-spacing: 0px;
-webkit-border-horizontal-spacing: 0px;
-webkit-border-vertical-spacing: 0px;
-webkit-text-size-adjust: auto;
-webkit-text-stroke-width: 0px; "><br>
</div>
<div>
<div>
<div><span class="Apple-style-span"
style="font-size: 12px; ">"Like"
NCBO on Facebook: <a
moz-do-not-send="true"
href="http://on.fb.me/bioontology">http://on.fb.me/bioontology</a></span></div>
<div><span class="Apple-style-span"
style="font-size: 12px; "><br>
</span></div>
<div><span class="Apple-style-span"
style="font-size: 12px; ">Follow
NCBO on Twitter: <a
moz-do-not-send="true"
href="http://twitter.com/#%21/bioontology">http://twitter.com/#!/bioontology</a></span></div>
<div><span class="Apple-style-span"
style="font-size: 12px; "><br>
</span></div>
<div><span class="Apple-style-span"
style="font-size: 12px; ">Join in
Discussions on LinkedIn: <a
moz-do-not-send="true"
href="http://linkd.in/ncbo-group">http://linkd.in/ncbo-group</a></span></div>
</div>
</div>
</div>
</div>
</span></div>
</span></div>
</span></div>
</span></span>
</div>
<br>
</blockquote>
<br>
<pre class="moz-signature" cols="72">--
**********************************************************
Laurel (Lol) Cooper, PhD
Coordinator, Plant Ontology Consortium
Dept. of Botany and Plant Pathology
Rm 3086, Cordley Hall
Oregon State University
Corvallis, OR 97331
Web: <a class="moz-txt-link-abbreviated" href="http://www.plantontology.org">www.plantontology.org</a>
Phone: 541-737-5272
Fax: 541-737-3573
Skype: cooperlol910
***********************************************************</pre>
</body>
</html>