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This is fixed for all future uploads and no action is needed on your
part. It was an issue with encoding our output that was causing the
problem.<br>
<br>
Paul R Alexander<br>
Web / UI Developer<br>
NCBO BioPortal<br>
Stanford Center for Biomedical Informatics Research<br>
<br>
<br>
<div class="moz-cite-prefix">On 5/9/12 1:06 PM, Rob Wynden wrote:<br>
</div>
<blockquote cite="mid:4FAACE4B.1070004@ucsf.edu" type="cite">
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<font face="Monaco">Is this fixed for all future uploads also?<br>
Thanks!<br>
Rob<br>
<br>
</font><br>
On 5/9/12 1:04 PM, Mobed, Ketty wrote:
<blockquote
cite="mid:E1CEAFE03E32C444ADF59F09233647950DAD33@ex11.net.ucsf.edu"
type="cite">
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charset=ISO-8859-1">
<div style="direction: ltr;font-family: Arial;color:
#000000;font-size: 12pt;">Thanks Trish. Yes, I saw. This was
fast!<br>
<br>
There are several other expression like this, have they all
now been fixed or should I send you the specific instances to
be fixed internally?<br>
<div><br>
Thanks again,<br>
<div style="font-family:Tahoma; font-size:13px"><span
style="color:rgb(0,0,255)"><font size="3"><span
style="color:rgb(0,0,0); font-family:Arial">Ketty</span></font><br>
</span><br>
</div>
</div>
<div style="font-family: Times New Roman; color: #000000;
font-size: 16px">
<hr tabindex="-1">
<div style="direction: ltr;" id="divRpF410595"><font
color="#000000" face="Tahoma" size="2"><b>From:</b>
Trish Whetzel [<a moz-do-not-send="true"
class="moz-txt-link-abbreviated"
href="mailto:whetzel@stanford.edu">whetzel@stanford.edu</a>]<br>
<b>Sent:</b> Wednesday, May 09, 2012 1:01 PM<br>
<b>To:</b> Wynden, Rob; Mobed, Ketty<br>
<b>Cc:</b> <a moz-do-not-send="true"
class="moz-txt-link-abbreviated"
href="mailto:support@bioontology.org">support@bioontology.org</a>
Support<br>
<b>Subject:</b> Re: Help with expression (cutoff)<br>
</font><br>
</div>
<div>
<div>The expression is now correctly displayed in the UI:</div>
<div><a moz-do-not-send="true"
href="http://bioportal.bioontology.org/ontologies/47403/?p=terms&conceptid=MM_CLASS_101"
target="_blank">http://bioportal.bioontology.org/ontologies/47403/?p=terms&conceptid=MM_CLASS_101</a></div>
<div><br>
</div>
<div>Trish </div>
<div><br>
</div>
<br>
<div>
<div>On May 9, 2012, at 10:06 AM, Rob Wynden wrote:</div>
<br class="Apple-interchange-newline">
<blockquote type="cite">
<div bgcolor="#FFFFFF"><font face="Monaco">We are
supposed to engage Allen by Friday of this week.<br>
<br>
Rob<br>
<br>
<br>
</font><br>
On 5/9/12 10:02 AM, Trish Whetzel wrote:
<blockquote type="cite">
<div>Thanks for the additional information. I
didn't realize these values need to be curated.
To help prioritize the issue, is this a blocker
for your work and when will you be working with
Barry to review this values?</div>
<div><br>
</div>
<div>Trish </div>
<div><br>
</div>
<br>
<div>
<div>On May 9, 2012, at 9:53 AM, Rob Wynden
wrote:</div>
<br class="Apple-interchange-newline">
<blockquote type="cite">
<div bgcolor="#FFFFFF"><font face="Monaco">Hi,<br>
<br>
Well we can't curate HOM Bool expressions
on BioPortal if folks can't read them. We
are about to start working in with Barry
Smith's team. This could hold up the
train.<br>
<br>
Rob<br>
<br>
<br>
</font><br>
On 5/9/12 9:50 AM, Trish Whetzel wrote:
<blockquote type="cite">
<div>Hi Rob and Ketty, </div>
<div><br>
</div>
<div>It looks like there is an issue
rendering the expression in the Web
interface since the "Get Term" web
service call returns the expression [1]
and also calling the "Get Term" web
service from Excel GoogleDocs also
returns the expression. I'll submit a
bug report related to the rendering
issue. Can you confirm this using this
ontology is working properly in your
application?</div>
<div><br>
</div>
<div>Trish </div>
<div><br>
</div>
<div>[1] <a moz-do-not-send="true"
href="http://rest.bioontology.org/bioportal/concepts/47403?conceptid=MM_CLASS_101&apikey="
target="_blank">http://rest.bioontology.org/bioportal/concepts/47403?conceptid=MM_CLASS_101&apikey=</a>YourAPIKey</div>
<div><br>
</div>
<br>
<div>
<div>On May 9, 2012, at 9:22 AM, Rob
Wynden wrote:</div>
<br class="Apple-interchange-newline">
<blockquote type="cite">
<div bgcolor="#FFFFFF"><font
face="Monaco">I think that we may
be triggering an escape character
on the page. Is that correct?<br>
Rob<br>
<br>
</font><br>
On 5/9/12 8:57 AM, Mobed, Ketty
wrote:
<blockquote type="cite">
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<div style="direction:ltr;
font-family:Arial;
color:#000000; font-size:12pt">Hi
Trish,<br>
<br>
here is a problem that I have
run into. I have attached the
Protege generated .owl file for
HOM-ORTHO (BP ID# 1697). When
you open up the Protege owl file
and click on the left to open
OrthoSurgery -> Diagnoses
-> Comorbidities ->
Anemia, then on the right hand
side the expression for
HOM-BOOL1 reads
(I9CM>I9CM.2799 AND
I9CM<I9CM.2860), and this is
correct. Now when I upload the
HOM-ORTHO.owl file to BP, then
when you expand the ontology to
Anemia you see that Hom Bool1
was cut-off and only reads
(I9CM>I9CM.2799 AND I9CM . <br>
<br>
Why is this? This is the SQLite
syntax that we need to process
our HOM translator. Any help
will be appreciated.<br>
<div><br>
Thanks,<br>
<div
style="font-family:Tahoma;
font-size:13px"><span
style="color:rgb(0,0,255)"><font
size="3"><span
style="color:rgb(0,0,0);
font-family:Arial">Ketty</span></font><br>
<font size="3"><br>
<span
style="font-family:Helvetica;
color:rgb(128,0,128)">'It's
the little things that
matter'</span></font><br>
<br>
<span
style="font-family:Helvetica;
color:rgb(51,51,51)">Ketty
Mobed, PhD</span></span><br
style="color:rgb(51,51,51);
font-family:Helvetica">
<span
style="color:rgb(51,51,51);
font-family:Helvetica">UCSF-IHPS-Informatics
Lab</span><br
style="color:rgb(51,51,51);
font-family:Helvetica">
<span
style="color:rgb(51,51,51);
font-family:Helvetica"><a
moz-do-not-send="true"
class="moz-txt-link-abbreviated"
href="mailto:ketty.mobed@ucsf.edu" target="_blank">ketty.mobed@ucsf.edu</a></span><br
style="color:rgb(51,51,51);
font-family:Helvetica">
<span
style="color:rgb(51,51,51);
font-family:Helvetica">415-352-8815</span><br>
</div>
</div>
</div>
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