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    This is fixed for all future uploads and no action is needed on your
    part. It was an issue with encoding our output that was causing the
    problem.<br>
    <br>
    Paul R Alexander<br>
    Web / UI Developer<br>
    NCBO BioPortal<br>
    Stanford Center for Biomedical Informatics Research<br>
    <br>
    <br>
    <div class="moz-cite-prefix">On 5/9/12 1:06 PM, Rob Wynden wrote:<br>
    </div>
    <blockquote cite="mid:4FAACE4B.1070004@ucsf.edu" type="cite">
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      <font face="Monaco">Is this fixed for all future uploads also?<br>
        Thanks!<br>
        Rob<br>
        <br>
      </font><br>
      On 5/9/12 1:04 PM, Mobed, Ketty wrote:
      <blockquote
        cite="mid:E1CEAFE03E32C444ADF59F09233647950DAD33@ex11.net.ucsf.edu"
        type="cite">
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        <div style="direction: ltr;font-family: Arial;color:
          #000000;font-size: 12pt;">Thanks Trish. Yes, I saw. This was
          fast!<br>
          <br>
          There are several other expression like this, have they all
          now been fixed or should I send you the specific instances to
          be fixed internally?<br>
          <div><br>
            Thanks again,<br>
            <div style="font-family:Tahoma; font-size:13px"><span
                style="color:rgb(0,0,255)"><font size="3"><span
                    style="color:rgb(0,0,0); font-family:Arial">Ketty</span></font><br>
              </span><br>
            </div>
          </div>
          <div style="font-family: Times New Roman; color: #000000;
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            <div style="direction: ltr;" id="divRpF410595"><font
                color="#000000" face="Tahoma" size="2"><b>From:</b>
                Trish Whetzel [<a moz-do-not-send="true"
                  class="moz-txt-link-abbreviated"
                  href="mailto:whetzel@stanford.edu">whetzel@stanford.edu</a>]<br>
                <b>Sent:</b> Wednesday, May 09, 2012 1:01 PM<br>
                <b>To:</b> Wynden, Rob; Mobed, Ketty<br>
                <b>Cc:</b> <a moz-do-not-send="true"
                  class="moz-txt-link-abbreviated"
                  href="mailto:support@bioontology.org">support@bioontology.org</a>
                Support<br>
                <b>Subject:</b> Re: Help with expression (cutoff)<br>
              </font><br>
            </div>
            <div>
              <div>The expression is now correctly displayed in the UI:</div>
              <div><a moz-do-not-send="true"
href="http://bioportal.bioontology.org/ontologies/47403/?p=terms&conceptid=MM_CLASS_101"
                  target="_blank">http://bioportal.bioontology.org/ontologies/47403/?p=terms&conceptid=MM_CLASS_101</a></div>
              <div><br>
              </div>
              <div>Trish </div>
              <div><br>
              </div>
              <br>
              <div>
                <div>On May 9, 2012, at 10:06 AM, Rob Wynden wrote:</div>
                <br class="Apple-interchange-newline">
                <blockquote type="cite">
                  <div bgcolor="#FFFFFF"><font face="Monaco">We are
                      supposed to engage Allen by Friday of this week.<br>
                      <br>
                      Rob<br>
                      <br>
                      <br>
                    </font><br>
                    On 5/9/12 10:02 AM, Trish Whetzel wrote:
                    <blockquote type="cite">
                      <div>Thanks for the additional information. I
                        didn't realize these values need to be curated.
                        To help prioritize the issue, is this a blocker
                        for your work and when will you be working with
                        Barry to review this values?</div>
                      <div><br>
                      </div>
                      <div>Trish </div>
                      <div><br>
                      </div>
                      <br>
                      <div>
                        <div>On May 9, 2012, at 9:53 AM, Rob Wynden
                          wrote:</div>
                        <br class="Apple-interchange-newline">
                        <blockquote type="cite">
                          <div bgcolor="#FFFFFF"><font face="Monaco">Hi,<br>
                              <br>
                              Well we can't curate HOM Bool expressions
                              on BioPortal if folks can't read them.  We
                              are about to start working in with Barry
                              Smith's team.  This could hold up the
                              train.<br>
                              <br>
                              Rob<br>
                              <br>
                              <br>
                            </font><br>
                            On 5/9/12 9:50 AM, Trish Whetzel wrote:
                            <blockquote type="cite">
                              <div>Hi Rob and Ketty, </div>
                              <div><br>
                              </div>
                              <div>It looks like there is an issue
                                rendering the expression in the Web
                                interface since the "Get Term" web
                                service call returns the expression [1]
                                and also calling the "Get Term" web
                                service from Excel GoogleDocs also
                                returns the expression. I'll submit a
                                bug report related to the rendering
                                issue. Can you confirm this using this
                                ontology is working properly in your
                                application?</div>
                              <div><br>
                              </div>
                              <div>Trish </div>
                              <div><br>
                              </div>
                              <div>[1] <a moz-do-not-send="true"
href="http://rest.bioontology.org/bioportal/concepts/47403?conceptid=MM_CLASS_101&apikey="
                                  target="_blank">http://rest.bioontology.org/bioportal/concepts/47403?conceptid=MM_CLASS_101&apikey=</a>YourAPIKey</div>
                              <div><br>
                              </div>
                              <br>
                              <div>
                                <div>On May 9, 2012, at 9:22 AM, Rob
                                  Wynden wrote:</div>
                                <br class="Apple-interchange-newline">
                                <blockquote type="cite">
                                  <div bgcolor="#FFFFFF"><font
                                      face="Monaco">I think that we may
                                      be triggering an escape character
                                      on the page.  Is that correct?<br>
                                      Rob<br>
                                      <br>
                                    </font><br>
                                    On 5/9/12 8:57 AM, Mobed, Ketty
                                    wrote:
                                    <blockquote type="cite">
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                                      <div style="direction:ltr;
                                        font-family:Arial;
                                        color:#000000; font-size:12pt">Hi
                                        Trish,<br>
                                        <br>
                                        here is a problem that I have
                                        run into. I have attached the
                                        Protege generated .owl file for
                                        HOM-ORTHO (BP ID# 1697). When
                                        you open up the Protege owl file
                                        and click on the left to open
                                        OrthoSurgery -> Diagnoses
                                        -> Comorbidities ->
                                        Anemia, then on the right hand
                                        side the expression for
                                        HOM-BOOL1 reads
                                        (I9CM>I9CM.2799 AND
                                        I9CM<I9CM.2860), and this is
                                        correct. Now when I upload the
                                        HOM-ORTHO.owl file to BP, then
                                        when you expand the ontology to
                                        Anemia you see that Hom Bool1
                                        was cut-off and only reads
                                        (I9CM>I9CM.2799 AND I9CM  . <br>
                                        <br>
                                        Why is this? This is the SQLite
                                        syntax that we need to process
                                        our HOM translator. Any help
                                        will be appreciated.<br>
                                        <div><br>
                                          Thanks,<br>
                                          <div
                                            style="font-family:Tahoma;
                                            font-size:13px"><span
                                              style="color:rgb(0,0,255)"><font
                                                size="3"><span
                                                  style="color:rgb(0,0,0);
                                                  font-family:Arial">Ketty</span></font><br>
                                              <font size="3"><br>
                                                <span
                                                  style="font-family:Helvetica;
                                                  color:rgb(128,0,128)">'It's

                                                  the little things that
                                                  matter'</span></font><br>
                                              <br>
                                              <span
                                                style="font-family:Helvetica;
                                                color:rgb(51,51,51)">Ketty

                                                Mobed, PhD</span></span><br
                                              style="color:rgb(51,51,51);

                                              font-family:Helvetica">
                                            <span
                                              style="color:rgb(51,51,51);
                                              font-family:Helvetica">UCSF-IHPS-Informatics

                                              Lab</span><br
                                              style="color:rgb(51,51,51);
                                              font-family:Helvetica">
                                            <span
                                              style="color:rgb(51,51,51);
                                              font-family:Helvetica"><a
                                                moz-do-not-send="true"
                                                class="moz-txt-link-abbreviated"
href="mailto:ketty.mobed@ucsf.edu" target="_blank">ketty.mobed@ucsf.edu</a></span><br
                                              style="color:rgb(51,51,51);

                                              font-family:Helvetica">
                                            <span
                                              style="color:rgb(51,51,51);
                                              font-family:Helvetica">415-352-8815</span><br>
                                          </div>
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      <pre wrap="">_______________________________________________
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</pre>
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