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Editing the view information should now work properly. Sorry for the
inconvenience.<br>
<br>
Paul R Alexander<br>
Senior Software Engineer<br>
NCBO BioPortal<br>
Stanford Center for Biomedical Informatics Research<br>
<br>
<br>
<div class="moz-cite-prefix">On 5/14/12 9:51 AM, Trish Whetzel
wrote:<br>
</div>
<blockquote
cite="mid:FF403C7F-AE2D-4CC3-85C4-1BAECEA03A6C@stanford.edu"
type="cite">
<div>Hi Arianna,</div>
<div><br>
</div>
<div>You are listed as the admin for the new version so I'm not
sure why selecting the Admin tab option "Edit View Information"
is re-directing you to the "Home" page. Paul, do you know why
this is happening?</div>
<div><br>
</div>
<div>What error message is the i2b2-ncbo extraction tool
returning? Are you using the ontology version id "48004" with
the tool? The latest version, 48006, did not complete parsing
and we will look into this. </div>
<div><br>
</div>
<div>Trish </div>
<div><br>
</div>
<br>
<div>
<div>On May 14, 2012, at 8:15 AM, arianna dagliati wrote:</div>
<br class="Apple-interchange-newline">
<blockquote type="cite">Dear Trish,
<div>you can find the screenshot attached. </div>
<div>I'm using the NCBO Extraction tool package that you find
at this link <a moz-do-not-send="true"
href="https://community.i2b2.org/wiki/display/NCBO/NCBO+Ontology+Tools">https://community.i2b2.org/wiki/display/NCBO/NCBO+Ontology+Tools</a></div>
<div><br>
</div>
<div>Arianna<br>
<br>
<div class="gmail_quote">2012/5/14 Trish Whetzel <span
dir="ltr"><<a moz-do-not-send="true"
href="mailto:whetzel@stanford.edu" target="_blank">whetzel@stanford.edu</a>></span><br>
<blockquote class="gmail_quote" style="margin-top: 0px;
margin-right: 0px; margin-bottom: 0px; margin-left:
0.8ex; border-left-width: 1px; border-left-color:
rgb(204, 204, 204); border-left-style: solid;
padding-left: 1ex; position: static; z-index: auto; ">
<div style="word-wrap:break-word">
<div>BioPortal is designed to support multiple
versions of ontologies, therefore I'm not sure that
is the issue. Can you send a screenshot of the page
with the Administer link, is it the page: <a
moz-do-not-send="true"
href="http://bioportal.bioontology.org/ontologies/2105?p=terms"
target="_blank">http://bioportal.bioontology.org/ontologies/2105?p=terms</a>
?</div>
<div><br>
</div>
<div>Also, is this the link for the i2b2 ncbo tool you
refer to: <a moz-do-not-send="true"
href="http://i2b2.bioontology.org/"
target="_blank">http://i2b2.bioontology.org/</a></div>
<span class="HOEnZb"><font color="#888888">
<div>
<br>
</div>
<div>Trish </div>
</font></span>
<div>
<div class="h5">
<div><br>
</div>
<br>
<div>
<div>On May 14, 2012, at 3:21 AM, arianna
dagliati wrote:</div>
<br>
<blockquote type="cite">Dear Trish,
<div>i'm sorry to disturb you again, but i
still can't use the i2b2 ncbo tool through
ncbo rest service, i think it's due to the
duplication of the view (mine, wrong, in
owl/xml and the one you've uploaded in the
correct rdf/owl format). </div>
<div>is it possible for you to delete the
wrong one? </div>
<div>i think there could be a bug because when
i click on administer --> edit version
i'm redirected to the bioportal homepage.</div>
<div><br>
</div>
<div>Thanks!</div>
<div><br>
</div>
<div>Best</div>
<div>Arianna<br>
<br>
<div class="gmail_quote">2012/5/7 arianna
dagliati <span dir="ltr"><<a
moz-do-not-send="true"
href="mailto:aridag@gmail.com"
target="_blank">aridag@gmail.com</a>></span><br>
<blockquote class="gmail_quote"
style="margin:0 0 0 .8ex;border-left:1px
#ccc solid;padding-left:1ex">
Dear Trish,
<div>thank you very much for your help!</div>
<div><br>
</div>
<div>Best</div>
<div><span><font color="#888888">Arianna</font></span>
<div>
<div><br>
<div><br>
<div class="gmail_quote">2012/5/4
Trish Whetzel <span dir="ltr"><<a
moz-do-not-send="true"
href="mailto:whetzel@stanford.edu"
target="_blank">whetzel@stanford.edu</a>></span><br>
<blockquote
class="gmail_quote"
style="margin:0 0 0
.8ex;border-left:1px #ccc
solid;padding-left:1ex">
<div
style="word-wrap:break-word">
<div>Hi Arianna, </div>
<div><br>
</div>
<div>The file was saved as
OWL/XML, but needs to be
saved as RDF/XML for
loading into BioPortal.
I've re-loaded the the
RDF/XML formatted file.</div>
<span><font
color="#888888">
<div><br>
</div>
<div>Trish </div>
</font></span>
<div>
<div>
<div><br>
</div>
<br>
<div>
<div>On May 3, 2012,
at 11:23 AM, Trish
Whetzel wrote:</div>
<br>
<blockquote
type="cite">
<div
style="word-wrap:break-word">
<div>We'll take
a look at
this.</div>
<div><br>
</div>
<div>Trish </div>
<div><br>
</div>
<br>
<div>
<div>On May 3,
2012, at 2:45
AM, <a
moz-do-not-send="true"
href="mailto:support@bioontology.org" target="_blank">support@bioontology.org</a>
wrote:</div>
<br>
<blockquote
type="cite">
<div><br>
Name: aridag<br>
<br>
Email: <a
moz-do-not-send="true"
href="mailto:aridag@gmail.com" target="_blank">aridag@gmail.com</a><br>
<br>
Location: <a
moz-do-not-send="true" href="http://bioportal.bioontology.org/"
target="_blank">http://bioportal.bioontology.org/</a><br>
<br>
Comment:<br>
Dear NCBO
support,<br>
i've submitted
a SNOMED view
ontology last
week.<br>
=======================<br>
Description:
The Body
Structure
subtree in
SNOMED-CT<br>
Ontology ID:
2105<br>
=======================<br>
but i got an
error back
accessing it (<a
moz-do-not-send="true"
href="http://bioportal.bioontology.org/ontologies/2105?p=terms"
target="_blank">http://bioportal.bioontology.org/ontologies/2105?p=terms</a>)
and i can't
use the
extraction
rest service
(for i2b2 NCBO
tool).<br>
<br>
Could you
please advice
me if there's
anything wrong
with the owl
file i've
uploaded? or
it's just a
matter of time
you need to
process the
view?<br>
<br>
Thank you.<br>
Best <br>
Arianna - <a
moz-do-not-send="true" href="mailto:aridag@gmail.com" target="_blank">aridag@gmail.com</a><br>
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Whetzel, PhD</div>
<div
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Ontology</div>
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650-721-2378</div>
<div
style="line-height:normal;border-collapse:separate;letter-spacing:normal;font-variant:normal;text-transform:none;font-style:normal;font-size:12px;white-space:normal;font-family:Arial;font-weight:normal;word-spacing:0px"><a
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<span><Schermata 2012-05-14 a 17.08.24.png></span></blockquote>
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-webkit-text-size-adjust: auto;
-webkit-text-stroke-width: 0px; ">Trish
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