<html><head></head><body style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space; "><div>Hi Rhett, </div><div><br></div><div>Can you send your BioPortal username?</div><div><br></div><div>Trish </div><div><br></div><div><br></div><br><div><div>On Jul 25, 2012, at 6:52 PM, Rhett Hillary wrote:</div><br class="Apple-interchange-newline"><blockquote type="cite">
  
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    Hello,<br>
    <br>
    I am after the status of the BioPortal VM image. Is there a newer
    version than 0.5? If so could you please provide a link?<br>
    <br>
    Regards,<br>
    <br>
    Rhett Hillary<br>
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      -------- Original Message --------
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            <th nowrap="nowrap" valign="BASELINE" align="RIGHT">Subject:
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            <td>Re: ncbo appliance</td>
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            <th nowrap="nowrap" valign="BASELINE" align="RIGHT">Date: </th>
            <td>Wed, 25 Jul 2012 09:49:29 -0700</td>
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            <th nowrap="nowrap" valign="BASELINE" align="RIGHT">From: </th>
            <td>Rhett Hillary <a class="moz-txt-link-rfc2396E" href="mailto:rhett@profectushealthresearch.com"><rhett@profectushealthresearch.com></a></td>
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            <th nowrap="nowrap" valign="BASELINE" align="RIGHT">To: </th>
            <td>Trish Whetzel <a class="moz-txt-link-rfc2396E" href="mailto:whetzel@stanford.edu"><whetzel@stanford.edu></a></td>
          </tr>
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            <th nowrap="nowrap" valign="BASELINE" align="RIGHT">CC: </th>
            <td>Tony Martin <a class="moz-txt-link-rfc2396E" href="mailto:tony@profectushealthresearch.com"><tony@profectushealthresearch.com></a>,
              marc <a class="moz-txt-link-rfc2396E" href="mailto:marc@cybre.net"><marc@cybre.net></a></td>
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      <div class="moz-cite-prefix">Hi Trish,<br>
        <br>
        Has the new BioPortal VM appliance been released yet? If so
        could you please provide me with a link?<br>
        <br>
        Regards,<br>
        <br>
        Rhett Hillary<br>
        <br>
        -------- Original Message --------<br>
        Subject: Re: ncbo appliance<br>
        From: Trish Whetzel <a moz-do-not-send="true" class="moz-txt-link-rfc2396E" href="mailto:whetzel@stanford.edu"><whetzel@stanford.edu></a><br>
        To: Rhett Hillary <a moz-do-not-send="true" class="moz-txt-link-rfc2396E" href="mailto:rhett@profectushealthresearch.com"><rhett@profectushealthresearch.com></a><br>
        Date: 05/30/2012 04:59 PM<br>
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      <blockquote cite="mid:0676C4E1-AB3B-4075-88B2-78233EBE8165@stanford.edu" type="cite">
        <div>Are you using the <span class="Apple-style-span" style="-webkit-tap-highlight-color: rgba(26, 26, 26,
            0.296875); -webkit-composition-fill-color: rgba(175, 192,
            227, 0.230469); -webkit-composition-frame-color: rgba(77,
            128, 180, 0.230469); font-size: medium; ">ovftool? </span><br>
          <br>
          Sent from my iPhone</div>
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          On May 30, 2012, at 3:38 PM, Rhett Hillary <<a moz-do-not-send="true" href="mailto:rhett@profectushealthresearch.com">rhett@profectushealthresearch.com</a>>

          wrote:<br>
          <br>
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        <blockquote type="cite">
          <div> Hi Trish,<br>
            <br>
            Yes I followed the instructions<br>
            <br>
            for disk in `ls -1 *.vmdk`; do diskbase=`basename $disk
            .vmdk`; qemu-img convert -O raw ${diskbase}.vmdk
            ${diskbase}.img; done<br>
            <br>
            <b>qemu-img: error while reading sector 131072: Invalid
              argument<br>
              qemu-img: error while reading sector 131072: Invalid
              argument<br>
            </b><br>
            But it does create the disk images so I continued and
            created the XML file tried to start it. See below<br>
            <br>
            <a moz-do-not-send="true" href="https://dl.dropbox.com/u/906920/screenshots/screenshot-20120530153650.jpeg">https://dl.dropbox.com/u/906920/screenshots/screenshot-20120530153650.jpeg</a><br>
            <br>
            Rhett<br>
            <br>
            <br>
            On 05/30/2012 03:16 PM, Trish Whetzel wrote:
            <blockquote cite="mid:A148437D-6838-4CE7-9FB7-6A1527FC102A@stanford.edu" type="cite">
              <div>Are you following the instructions at:</div>
              <div><a moz-do-not-send="true" href="http://www.bioontology.org/wiki/index.php/Virtual_Appliance_FAQ#KVM">http://www.bioontology.org/wiki/index.php/Virtual_Appliance_FAQ#KVM</a></div>
              <div><br>
              </div>
              <div>In addition, a new version of the VM is currently
                being generated. New versions are generated quarterly.</div>
              <div><br>
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              <div>Trish </div>
              <div><br>
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              <br>
              <div>
                <div>On May 30, 2012, at 2:59 PM, Rhett Hillary wrote:</div>
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                <blockquote type="cite">
                  <div text="#000000" bgcolor="#FFFFFF"> Hello,<br>
                    <br>
                    We (UCSF) are attempting to install the BioPortal VM
                    under KVM. I have tried almost everything to convert
                    the disk files but they fail. Is the <br>
                    <pre>wget <a moz-do-not-send="true" href="http://www.bioontology.org/ncbo-appliance/ncbo-appliance-0.5.zip">http://www.bioontology.org/ncbo-appliance/ncbo-appliance-0.5.zip</a></pre>
                    The correct link?? I have followed the wiki and are
                    unable to convert the files. They dont even seem to
                    work under vmware player in window.<br>
                    <br>
                    Kind Regards,<br>
                    <br>
                    Rhett Hillary<br>
                    <br>
                    <br>
                    -------- Original Message --------
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                          <th nowrap="nowrap" valign="BASELINE" align="RIGHT">Subject: </th>
                          <td>Re: ncbo</td>
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                          <th nowrap="nowrap" valign="BASELINE" align="RIGHT">Date: </th>
                          <td>Wed, 30 May 2012 14:55:22 -0700 (PDT)</td>
                        </tr>
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                          <th nowrap="nowrap" valign="BASELINE" align="RIGHT">From: </th>
                          <td>marc <a moz-do-not-send="true" class="moz-txt-link-rfc2396E" href="mailto:marc@cybre.net"><</a><a moz-do-not-send="true" href="mailto:marc@cybre.net">marc@cybre.net</a>></td>
                        </tr>
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                          <th nowrap="nowrap" valign="BASELINE" align="RIGHT">To: </th>
                          <td>Rhett Hillary <a moz-do-not-send="true" class="moz-txt-link-rfc2396E" href="mailto:rhett@rhett.cc"><</a><a moz-do-not-send="true" href="mailto:rhett@rhett.cc">rhett@rhett.cc</a>></td>
                        </tr>
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                          <th nowrap="nowrap" valign="BASELINE" align="RIGHT">CC: </th>
                          <td>Tony Martin <a moz-do-not-send="true" class="moz-txt-link-rfc2396E" href="mailto:tony@profectushealthresearch.com"><</a><a moz-do-not-send="true" href="mailto:tony@profectushealthresearch.com">tony@profectushealthresearch.com</a>></td>
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                    <br>
                    <br>
                    <pre>Perhaps you should ask: <a moz-do-not-send="true" href="mailto:whetzel@stanford.edu">whetzel@stanford.edu</a> for some guidance?

On Wed, 30 May 2012, Rhett Hillary wrote:

> It seems this download is corrupted.. I tried converting the images to KVM on 
> linux and no luck. I tried importing them into VirtualBox.. no luck. Then I 
> tried importing the images to vmware player on windows, no luck. I think 
> there is something wrong with the disk files.
>
> How can we mail about this?
>
> Rhett
>
> On 05/23/2012 01:23 PM, marc wrote:
>> 
>> wget <a moz-do-not-send="true" href="http://www.bioontology.org/ncbo-appliance/ncbo-appliance-0.5.zip">http://www.bioontology.org/ncbo-appliance/ncbo-appliance-0.5.zip</a>
>> 
>> 
>> 
>> On Wed, 23 May 2012, Rhett Hillary wrote:
>> 
>>> If it needs more then we shouldnt be doing this in a VM.. I'll download it 
>>> directly to the host..Just give me the link and I will tell you when it is 
>>> done.
>>> 
>>> Rhett
>>> 
>>> On 05/23/2012 12:51 PM, marc wrote:
>>>> Hey Rhett,
>>>> 
>>>> I've downloaded what appears to be a VM image for ncbo bioportal that I'd 
>>>> like to take a look at.  Its sizable and I'd like for you to make the 
>>>> /mnt/data partition mounted on dev-teiid writable so that I can plop it 
>>>> down there, unzip it and have a look see.
>>>> 
>>>> Is that possible?
>>>> 
>>>> thanks,
>>>> 
>>>> -marc
>>>> 
>>> 
>
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