Hi Eric,<div><br></div><div>thanks for clarifying this "issue".</div><div><br></div><div>cheers,</div><div>Erick<br><br><div class="gmail_quote">On 22 February 2013 18:31, Eric Verbeek <span dir="ltr"><<a href="mailto:eric.l.verbeek@gmail.com" target="_blank">eric.l.verbeek@gmail.com</a>></span> wrote:<br>
<blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex">
  
    
  
  <div text="#000000" bgcolor="#FFFFFF">
    Hi Erick,<br>
    <br>
    The calls that the visualization makes are passing very sparse
    information; concept ids, ontology ids. Nothing large or detailed is
    sent out. I would suggest that you satisfy your users' concerns by
    looking at the relevant pieces of javascript, but it's all been
    generated from Java by GWT, and is not very readable.<br>
    <br>
    All of the calls are for BioPortal REST services, and all are tring
    to fetch additional data (such as mappings, of cocnept details) from
    identifiers such as concept and ontology ids. I don't think there is
    any need for concern about data or ontology information leaking out.<br>
    <br>
    Cheers,<br>
    ~Eric<div><div class="h5"><br>
    <br>
    <div>On 22/02/2013 1:47 AM, Erick Antezana
      wrote:<br>
    </div>
    <blockquote type="cite">Hi,
      <div><br>
      </div>
      <div>does it mean that my local bioportal (appliance) is sending
        some data so that the visualisation could be rendered? My users
        are a bit paranoid with their data/ontologies. This could be an
        issue...if so, is there a way to close/block it without loosing
        functionalities? </div>
      <div><br>
      </div>
      <div>cheers,</div>
      <div>Erick</div>
      <div><br>
        <br>
        <div class="gmail_quote">On 7 February 2013 19:49, Eric Verbeek
          <span dir="ltr"><<a href="mailto:eric.l.verbeek@gmail.com" target="_blank">eric.l.verbeek@gmail.com</a>></span>
          wrote:<br>
          <blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex">
            <div text="#000000" bgcolor="#FFFFFF"> Hi Sina and Ray,<br>
              <br>
              The visualization is in JavaScript, and makes calls to the
              REST services from there to the public BioPortal servers.
              I haven't worked with the VM yet. Does the VM have
              internet access? Does the configuration for BioPortal in
              the VM have different connectivity paths or requirements
              to the REST servers than the visualization uses?<br>
              <br>
              Sina, could you check a JavaScript error log or developer
              console for errors? If you are using Chrome, you can
              access it with Ctrl-Shift-J, or through Chrome's menu (the
              one with three stacked horizontal lines, on all OSes).
              There might be some hints for me in the JS errors.<span><font color="#888888"><br>
                  <br>
                  ~Eric</font></span>
              <div>
                <div><br>
                  <br>
                  <div>On 07/02/2013 10:32 AM, Ray Fergerson wrote:<br>
                  </div>
                  <blockquote type="cite">
                    <div>
                      <p class="MsoNormal"><span style="color:#1f497d">Sina,</span></p>
                      <p class="MsoNormal"><span style="color:#1f497d"> </span></p>
                      <p class="MsoNormal"><span style="color:#1f497d">Copying
                          Eric (the visualization guy). I don’t
                          understand this at all. I can confirm that
                          difference between what you see in your VM and
                          what we see. I believe that we are all
                          pointing that the same instance of the
                          visualization software though.</span></p>
                      <p class="MsoNormal"><span style="color:#1f497d"> </span></p>
                      <p class="MsoNormal"><span style="color:#1f497d">Eric,
                          any idea why this is happening? What would
                          cause this visualization configuration item to
                          not show up?</span></p>
                      <p class="MsoNormal"><span style="color:#1f497d"> </span></p>
                      <p class="MsoNormal"><span style="color:#1f497d">Ray</span></p>
                      <p class="MsoNormal"><span style="color:#1f497d"> </span></p>
                      <div>
                        <div style="border:none;border-top:solid #b5c4df 1.0pt;padding:3.0pt 0in 0in 0in">
                          <p class="MsoNormal" style="margin-left:.5in"><b><span style="font-size:10.0pt;font-family:"Tahoma","sans-serif"">From:</span></b><span style="font-size:10.0pt;font-family:"Tahoma","sans-serif"">
                              <a href="mailto:bioontology-support-bounces@lists.stanford.edu" target="_blank">bioontology-support-bounces@lists.stanford.edu</a>
                              [<a href="mailto:bioontology-support-bounces@lists.stanford.edu" target="_blank">mailto:bioontology-support-bounces@lists.stanford.edu</a>]
                              <b>On Behalf Of </b>Madani,Sina<br>
                              <b>Sent:</b> Thursday, February 07, 2013
                              5:56 AM<br>
                              <b>To:</b> <a href="mailto:support@bioontology.org" target="_blank">support@bioontology.org</a><br>
                              <b>Cc:</b> Riben,Michael Warren<br>
                              <b>Subject:</b> [bioontology-support]
                              Visualization tab</span></p>
                        </div>
                      </div>
                      <p class="MsoNormal" style="margin-left:.5in"> </p>
                      <p class="MsoNormal" style="margin-left:.5in">Hi,
                      </p>
                      <p class="MsoNormal" style="margin-left:.5in">We
                        noticed that the visualization widget of our
                        local instance is not working properly.
                        Comparing to your environment, apparently the
                        “Show SNOMED Clinical term” from the drop down
                        configuration menu is missing in our instance’s
                        UI.</p>
                      <p class="MsoNormal" style="margin-left:.5in">Is
                        there a configuration file that I can set this
                        in order to operationalize the Visualization
                        tab? </p>
                      <p class="MsoNormal" style="margin-left:.5in"> </p>
                      <p class="MsoNormal" style="margin-left:.5in">Thanks!</p>
                      <p class="MsoNormal" style="margin-left:.5in">Sina</p>
                      <p class="MsoNormal" style="margin-left:.5in"> </p>
                      <p class="MsoNormal" style="margin-left:.5in"> </p>
                      <p class="MsoNormal" style="margin-left:.5in"> </p>
                      <p class="MsoNormal" style="margin-left:.5in"><b><u>Our
                            local instance</u></b></p>
                      <p class="MsoNormal" style="margin-left:.5in"><img src="cid:part5.00090502.09040500@gmail.com" height="149" width="1154"></p>
                      <p class="MsoNormal" style="margin-left:.5in"> </p>
                      <p class="MsoNormal" style="margin-left:.5in"> </p>
                      <p class="MsoNormal" style="margin-left:.5in"> </p>
                      <p class="MsoNormal" style="margin-left:.5in"><b><u>Stanford

                            instance </u></b></p>
                      <p class="MsoNormal" style="margin-left:.5in"> </p>
                      <p class="MsoNormal" style="margin-left:.5in"><img src="cid:part6.09000105.05010206@gmail.com" height="154" width="1049"></p>
                    </div>
                  </blockquote>
                  <br>
                </div>
              </div>
            </div>
            <br>
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            <a href="mailto:bioontology-support@lists.stanford.edu" target="_blank">bioontology-support@lists.stanford.edu</a><br>
            <a href="https://mailman.stanford.edu/mailman/listinfo/bioontology-support" target="_blank">https://mailman.stanford.edu/mailman/listinfo/bioontology-support</a><br>
            <br>
          </blockquote>
        </div>
        <br>
      </div>
    </blockquote>
    <br>
  </div></div></div>

</blockquote></div><br></div>