Hi Eric,<div><br></div><div>thanks for clarifying this "issue".</div><div><br></div><div>cheers,</div><div>Erick<br><br><div class="gmail_quote">On 22 February 2013 18:31, Eric Verbeek <span dir="ltr"><<a href="mailto:eric.l.verbeek@gmail.com" target="_blank">eric.l.verbeek@gmail.com</a>></span> wrote:<br>
<blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex">
<div text="#000000" bgcolor="#FFFFFF">
Hi Erick,<br>
<br>
The calls that the visualization makes are passing very sparse
information; concept ids, ontology ids. Nothing large or detailed is
sent out. I would suggest that you satisfy your users' concerns by
looking at the relevant pieces of javascript, but it's all been
generated from Java by GWT, and is not very readable.<br>
<br>
All of the calls are for BioPortal REST services, and all are tring
to fetch additional data (such as mappings, of cocnept details) from
identifiers such as concept and ontology ids. I don't think there is
any need for concern about data or ontology information leaking out.<br>
<br>
Cheers,<br>
~Eric<div><div class="h5"><br>
<br>
<div>On 22/02/2013 1:47 AM, Erick Antezana
wrote:<br>
</div>
<blockquote type="cite">Hi,
<div><br>
</div>
<div>does it mean that my local bioportal (appliance) is sending
some data so that the visualisation could be rendered? My users
are a bit paranoid with their data/ontologies. This could be an
issue...if so, is there a way to close/block it without loosing
functionalities? </div>
<div><br>
</div>
<div>cheers,</div>
<div>Erick</div>
<div><br>
<br>
<div class="gmail_quote">On 7 February 2013 19:49, Eric Verbeek
<span dir="ltr"><<a href="mailto:eric.l.verbeek@gmail.com" target="_blank">eric.l.verbeek@gmail.com</a>></span>
wrote:<br>
<blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex">
<div text="#000000" bgcolor="#FFFFFF"> Hi Sina and Ray,<br>
<br>
The visualization is in JavaScript, and makes calls to the
REST services from there to the public BioPortal servers.
I haven't worked with the VM yet. Does the VM have
internet access? Does the configuration for BioPortal in
the VM have different connectivity paths or requirements
to the REST servers than the visualization uses?<br>
<br>
Sina, could you check a JavaScript error log or developer
console for errors? If you are using Chrome, you can
access it with Ctrl-Shift-J, or through Chrome's menu (the
one with three stacked horizontal lines, on all OSes).
There might be some hints for me in the JS errors.<span><font color="#888888"><br>
<br>
~Eric</font></span>
<div>
<div><br>
<br>
<div>On 07/02/2013 10:32 AM, Ray Fergerson wrote:<br>
</div>
<blockquote type="cite">
<div>
<p class="MsoNormal"><span style="color:#1f497d">Sina,</span></p>
<p class="MsoNormal"><span style="color:#1f497d"> </span></p>
<p class="MsoNormal"><span style="color:#1f497d">Copying
Eric (the visualization guy). I don’t
understand this at all. I can confirm that
difference between what you see in your VM and
what we see. I believe that we are all
pointing that the same instance of the
visualization software though.</span></p>
<p class="MsoNormal"><span style="color:#1f497d"> </span></p>
<p class="MsoNormal"><span style="color:#1f497d">Eric,
any idea why this is happening? What would
cause this visualization configuration item to
not show up?</span></p>
<p class="MsoNormal"><span style="color:#1f497d"> </span></p>
<p class="MsoNormal"><span style="color:#1f497d">Ray</span></p>
<p class="MsoNormal"><span style="color:#1f497d"> </span></p>
<div>
<div style="border:none;border-top:solid #b5c4df 1.0pt;padding:3.0pt 0in 0in 0in">
<p class="MsoNormal" style="margin-left:.5in"><b><span style="font-size:10.0pt;font-family:"Tahoma","sans-serif"">From:</span></b><span style="font-size:10.0pt;font-family:"Tahoma","sans-serif"">
<a href="mailto:bioontology-support-bounces@lists.stanford.edu" target="_blank">bioontology-support-bounces@lists.stanford.edu</a>
[<a href="mailto:bioontology-support-bounces@lists.stanford.edu" target="_blank">mailto:bioontology-support-bounces@lists.stanford.edu</a>]
<b>On Behalf Of </b>Madani,Sina<br>
<b>Sent:</b> Thursday, February 07, 2013
5:56 AM<br>
<b>To:</b> <a href="mailto:support@bioontology.org" target="_blank">support@bioontology.org</a><br>
<b>Cc:</b> Riben,Michael Warren<br>
<b>Subject:</b> [bioontology-support]
Visualization tab</span></p>
</div>
</div>
<p class="MsoNormal" style="margin-left:.5in"> </p>
<p class="MsoNormal" style="margin-left:.5in">Hi,
</p>
<p class="MsoNormal" style="margin-left:.5in">We
noticed that the visualization widget of our
local instance is not working properly.
Comparing to your environment, apparently the
“Show SNOMED Clinical term” from the drop down
configuration menu is missing in our instance’s
UI.</p>
<p class="MsoNormal" style="margin-left:.5in">Is
there a configuration file that I can set this
in order to operationalize the Visualization
tab? </p>
<p class="MsoNormal" style="margin-left:.5in"> </p>
<p class="MsoNormal" style="margin-left:.5in">Thanks!</p>
<p class="MsoNormal" style="margin-left:.5in">Sina</p>
<p class="MsoNormal" style="margin-left:.5in"> </p>
<p class="MsoNormal" style="margin-left:.5in"> </p>
<p class="MsoNormal" style="margin-left:.5in"> </p>
<p class="MsoNormal" style="margin-left:.5in"><b><u>Our
local instance</u></b></p>
<p class="MsoNormal" style="margin-left:.5in"><img src="cid:part5.00090502.09040500@gmail.com" height="149" width="1154"></p>
<p class="MsoNormal" style="margin-left:.5in"> </p>
<p class="MsoNormal" style="margin-left:.5in"> </p>
<p class="MsoNormal" style="margin-left:.5in"> </p>
<p class="MsoNormal" style="margin-left:.5in"><b><u>Stanford
instance </u></b></p>
<p class="MsoNormal" style="margin-left:.5in"> </p>
<p class="MsoNormal" style="margin-left:.5in"><img src="cid:part6.09000105.05010206@gmail.com" height="154" width="1049"></p>
</div>
</blockquote>
<br>
</div>
</div>
</div>
<br>
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<br>
</blockquote>
</div>
<br>
</div>
</blockquote>
<br>
</div></div></div>
</blockquote></div><br></div>