<div dir="ltr">Thanks Trish!<div><br></div><div>Two things:</div><div><br></div><div>1) The wiki seems to be a bit out of date in this respect. It gives examples for the alt virtual signature like:<div style><br></div><div style>
<a href="http://rest.bioontology.org/bioportal/virtual/ontology/1104?conceptid=BRO:Software&apikey=YourAPIKey">http://rest.bioontology.org/bioportal/virtual/ontology/1104?conceptid=BRO:Software&apikey=YourAPIKey</a><br>
</div><div style><br></div><div style>Which I think should be:</div><div style><br></div><div style><a href="http://rest.bioontology.org/bioportal/virtual/ontology/1104?conceptid=http%3A//bioontology.org/ontologies/BiomedicalResourceOntology.owl%23Software&apikey=YourAPIKey">http://rest.bioontology.org/bioportal/virtual/ontology/1104?conceptid=http%3A//bioontology.org/ontologies/BiomedicalResourceOntology.owl%23Software&apikey=YourAPIKey</a><br>
</div><div style><br></div><div style>(I would edit it myself, but I was denied a user account for the wiki, so I hope you guys don't mind me bugging you about these things)</div></div><div style><br></div><div style>
2) The new urls are working some of the time, but I'm still getting some funny 404's. For example, given the following results:</div><div style><br></div><div style><div>8<span class="" style="white-space:pre">        </span>47638/Field<span class="" style="white-space:pre">       </span>Data Field<span class="" style="white-space:pre">        </span><a href="http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#Field">http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#Field</a><span class="" style="white-space:pre">     </span>Field [...]</div>
<div><br></div><div style>I construct a URL like </div><div style><br></div><div style><a href="http://rest.bioontology.org/bioportal/virtual/ontology/1032?conceptid=http%3A%2F%2Fncicb.nci.nih.gov%2Fxml%2Fowl%2FEVS%2FThesaurus.owl%23Field&apikey=">http://rest.bioontology.org/bioportal/virtual/ontology/1032?conceptid=http%3A%2F%2Fncicb.nci.nih.gov%2Fxml%2Fowl%2FEVS%2FThesaurus.owl%23Field&apikey=</a><apikey><br>
</div><div style><br></div><div style>Which gives a 'concept not found' error. When I searched for the term through the web interface, I found it living at:</div><div style><br></div><div style><a href="http://bioportal.bioontology.org/ontologies/1032?p=terms&conceptid=http%3A%2F%2Fncicb.nci.nih.gov%2Fxml%2Fowl%2FEVS%2FThesaurus.owl%23C25507">http://bioportal.bioontology.org/ontologies/1032?p=terms&conceptid=http%3A%2F%2Fncicb.nci.nih.gov%2Fxml%2Fowl%2FEVS%2FThesaurus.owl%23C25507</a><br>
</div><div style><br></div><div style>I'm not sure what the 23C70773 is, but it doesn't seem to be anywhere in the tab-delimited results I get back for that concept.</div><div style><br></div><div style>Thanks,</div>
<div style>Colin</div></div></div><div class="gmail_extra"><br><br><div class="gmail_quote">On Mon, Apr 1, 2013 at 3:08 PM, Trish Whetzel <span dir="ltr"><<a href="mailto:whetzel@stanford.edu" target="_blank">whetzel@stanford.edu</a>></span> wrote:<br>
<blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex"><div style="word-wrap:break-word"><div>In this case, the ontology abbreviation is included as part of the "conceptid", therefore either the abbreviation also needs to be included as part of the conceptid:</div>
<div><a href="http://rest.bioontology.org/bioportal/virtual/ontology" target="_blank">http://rest.bioontology.org/bioportal/virtual/ontology</a>/1086?conceptid=ODGI%3ACharacterized&apikey=<apikey></div><div>OR </div>
<div>the preferred method is to use the full Id of the term (URL encoded) in the call formatted as:</div><div><a href="http://rest.bioontology.org/bioportal/virtual/ontology" target="_blank">http://rest.bioontology.org/bioportal/virtual/ontology</a>/1086?conceptid=http%3A%2F%<a href="http://2Fpurl.obolibrary.org" target="_blank">2Fpurl.obolibrary.org</a>%2Fobo%2FODGI.owl%23Characterized&apikey=<apikey></div>
<div><br></div><div>Trish </div><div><br></div><br><div><div><div class="h5"><div>On Mar 27, 2013, at 2:32 PM, Colin Morris wrote:</div><br></div></div><blockquote type="cite"><div><div class="h5"><div dir="ltr">Hi,<div><br>
</div><div>One of the concepts I got as output from the NCBO annotator was term 'Characterized' in ontology 39579 (ODGI - virtual ontology id 1086). </div><div><br></div><div>
But using the 'alt virtual signature' described in the documentation (<a href="http://www.bioontology.org/wiki/index.php/NCBO_REST_services#Term_services" target="_blank">http://www.bioontology.org/wiki/index.php/NCBO_REST_services#Term_services</a>) to build a url for this concept gives me a 404:</div>

<div><br></div><div><a href="http://rest.bioontology.org/bioportal/virtual/ontology/1086?conceptid=Characterized&apikey=" target="_blank">http://rest.bioontology.org/bioportal/virtual/ontology/1086?conceptid=Characterized&apikey=</a><apikey><br>

</div><div><br></div><div>Can you think of any reason why this would be?</div><div><br></div><div>Thanks,</div><div>Colin</div></div></div></div>
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