<div dir="ltr"><div><div>Hi Ray, <br><br></div>Just checking back on the failed parsing of NIFSTD. Is there anything on our side we can do to help resolve this?<br></div><div><br></div>Trish <br></div><div class="gmail_extra">
<br><br><div class="gmail_quote">On Wed, Aug 14, 2013 at 10:42 AM, Trish Whetzel <span dir="ltr"><<a href="mailto:whetzel@ucsd.edu" target="_blank">whetzel@ucsd.edu</a>></span> wrote:<br><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex">
<div style="word-wrap:break-word">Great, we'll check back at the end of the week.<span class="HOEnZb"><font color="#888888"><div><br></div></font></span><div><span class="HOEnZb"><font color="#888888">Trish </font></span><div>
<div class="h5"><br><div>
<div style="text-indent:0px;letter-spacing:normal;font-variant:normal;text-align:-webkit-auto;font-style:normal;font-weight:normal;line-height:normal;text-transform:none;font-size:medium;white-space:normal;font-family:Arial;word-wrap:break-word;word-spacing:0px">
<div style="text-indent:0px;letter-spacing:normal;font-variant:normal;text-align:-webkit-auto;font-style:normal;font-weight:normal;line-height:normal;text-transform:none;font-size:medium;white-space:normal;font-family:Arial;word-wrap:break-word;word-spacing:0px">
<div><div><span style="font-size:12px"><br></span></div><div><span style="font-size:12px"><br></span></div><div><span style="font-size:12px"><br></span></div></div></div></div></div><div><div>On Aug 14, 2013, at 10:39 AM, "Ray Fergerson" <<a href="mailto:ray.fergerson@stanford.edu" target="_blank">ray.fergerson@stanford.edu</a>> wrote:</div>
<br><blockquote type="cite"><div link="blue" vlink="purple" style="font-family:Arial;font-size:medium;font-style:normal;font-variant:normal;font-weight:normal;letter-spacing:normal;line-height:normal;text-align:-webkit-auto;text-indent:0px;text-transform:none;white-space:normal;word-spacing:0px" lang="EN-US">
<div><div style="margin:0in 0in 0.0001pt;font-size:12pt;font-family:'Times New Roman',serif"><span style="font-size:11pt;font-family:Calibri,sans-serif;color:rgb(31,73,125)">Yes, we have confirmed that this was due to an out of memory issue on the parsing server. We are going to parse it manually. Should be up in a few days.<u></u><u></u></span></div>
<div style="margin:0in 0in 0.0001pt;font-size:12pt;font-family:'Times New Roman',serif"><span style="font-size:11pt;font-family:Calibri,sans-serif;color:rgb(31,73,125)"> </span></div><div style="margin:0in 0in 0.0001pt;font-size:12pt;font-family:'Times New Roman',serif">
<span style="font-size:11pt;font-family:Calibri,sans-serif;color:rgb(31,73,125)">Ray<u></u><u></u></span></div><div style="margin:0in 0in 0.0001pt;font-size:12pt;font-family:'Times New Roman',serif"><span style="font-size:11pt;font-family:Calibri,sans-serif;color:rgb(31,73,125)"> </span></div>
<div style="margin:0in 0in 0.0001pt 0.5in;font-size:12pt;font-family:'Times New Roman',serif"><b><span style="font-size:10pt;font-family:Tahoma,sans-serif">From:</span></b><span style="font-size:10pt;font-family:Tahoma,sans-serif"><span> </span>Trish Whetzel [mailto:<a href="mailto:plwhetzel@" target="_blank">plwhetzel@</a><a href="http://gmail.com" style="color:purple;text-decoration:underline" target="_blank">gmail.com</a>]<span> </span><br>
<b>Sent:</b><span> </span>Tuesday, August 13, 2013 6:37 PM<br><b>To:</b><span> </span>Fahim Imam<br><b>Cc:</b><span> </span>Ray Fergerson; Maryann Martone; BioPortal User Support; Trish Whetzel<br><b>Subject:</b><span> </span>Re: [bioontology-support] Latest version of NIFSTD failed parsing in BioPortal<u></u><u></u></span></div>
<div style="margin:0in 0in 0.0001pt 0.5in;font-size:12pt;font-family:'Times New Roman',serif"><u></u> <u></u></div><div><div style="margin:0in 0in 0.0001pt 0.5in;font-size:12pt;font-family:'Times New Roman',serif">
Ray,<span> </span><br><br>Do you have any updates on the issue related to the failed parsing status of NIFSTD [1]?<br><br>Trish<span> </span><br><br>[1]<span> </span><a href="http://bioportal.bioontology.org/ontologies/1084" style="color:purple;text-decoration:underline" target="_blank">http://bioportal.bioontology.org/ontologies/1084</a><u></u><u></u></div>
</div><div><p class="MsoNormal" style="margin:0in 0in 12pt 0.5in;font-size:12pt;font-family:'Times New Roman',serif"><u></u> <u></u></p><div><div style="margin:0in 0in 0.0001pt 0.5in;font-size:12pt;font-family:'Times New Roman',serif">
On Thu, Aug 8, 2013 at 9:33 PM, Fahim Imam <<a href="mailto:smtifahim@gmail.com" style="color:purple;text-decoration:underline" target="_blank">smtifahim@gmail.com</a>> wrote:<u></u><u></u></div><div><div style="margin:0in 0in 0.0001pt 0.5in;font-size:12pt;font-family:'Times New Roman',serif">
Yes. The ontology is relatively bigger than the previous version.<u></u><u></u></div><div><div style="margin:0in 0in 0.0001pt 0.5in;font-size:12pt;font-family:'Times New Roman',serif"><u></u> <u></u></div></div><div>
<div style="margin:0in 0in 0.0001pt 0.5in;font-size:12pt;font-family:'Times New Roman',serif">Thanks,<u></u><u></u></div></div><div><div style="margin:0in 0in 0.0001pt 0.5in;font-size:12pt;font-family:'Times New Roman',serif">
Fahim<u></u><u></u></div></div></div><div><p class="MsoNormal" style="margin:0in 0in 12pt 0.5in;font-size:12pt;font-family:'Times New Roman',serif"><u></u> <u></u></p><div><div style="margin:0in 0in 0.0001pt 0.5in;font-size:12pt;font-family:'Times New Roman',serif">
On Thu, Aug 8, 2013 at 7:39 PM, Ray Fergerson <<a href="mailto:ray.fergerson@stanford.edu" style="color:purple;text-decoration:underline" target="_blank">ray.fergerson@stanford.edu</a>> wrote:<u></u><u></u></div><div style="margin:0in 0in 0.0001pt 0.5in;font-size:12pt;font-family:'Times New Roman',serif">
Trish,<br><br>My guess after a small be of investigation is that this problem appears to<br>be related to the size of the ontology. Has it gotten a lot bigger<br>recently? Our expert will be back next week. A solution will probably have<br>
to wait until then.<br><br>Ray<u></u><u></u></div><div><p class="MsoNormal" style="margin:0in 0in 12pt 0.5in;font-size:12pt;font-family:'Times New Roman',serif"><br>-----Original Message-----<br>From:<span> </span><a href="mailto:bioontology-support-bounces@lists.stanford.edu" style="color:purple;text-decoration:underline" target="_blank">bioontology-support-bounces@lists.stanford.edu</a><br>
[mailto:<a href="mailto:bioontology-support-bounces@lists.stanford.edu" style="color:purple;text-decoration:underline" target="_blank">bioontology-support-bounces@lists.stanford.edu</a>] On Behalf Of Trish<br>Whetzel<br>Sent: Thursday, August 08, 2013 11:36 AM<br>
To: BioPortal User Support; Fahim Imam<br>Cc: Maryann Martone<br>Subject: [bioontology-support] Latest version of NIFSTD failed parsing in<br>BioPortal<br><br>Hello Support,<br><br>I noticed that the latest version of NIFSTD failed parsing. Do you know<br>
how we can resolve this issue?<br><br>Thanks,<br>Trish<br><br><u></u><u></u></p></div><div style="margin:0in 0in 0.0001pt 0.5in;font-size:12pt;font-family:'Times New Roman',serif">_______________________________________________<br>
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