<div dir="ltr"><div>Is it still the case that URIs for ontologies in the OWL format are displayed as provided in the OWL file?<br><br></div>Trish <br></div><div class="gmail_extra"><br><br><div class="gmail_quote">On Fri, Oct 11, 2013 at 10:15 AM, Paul R Alexander <span dir="ltr"><<a href="mailto:palexander@stanford.edu" target="_blank">palexander@stanford.edu</a>></span> wrote:<br>
<blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex"><div style="word-wrap:break-word">Jonathan,<div><br></div><div>We use the OBO Foundry id policy to generate URIs for the full id. This is handled in code so there is no configuration option that would allow you to override the method used to generate the id, it would require changing the code itself by hardcoding your ontology id (or change the method used for all ontologies).</div>
<div><br></div><div>Future versions of the appliance may work better with OBO ontologies where proper idspace mappings exist, though I don't think we've done any extensive testing in this area.</div><div><br></div>
<div>Paul</div><div><br></div><div><br><div><div><div class="h5"><div>On Oct 11, 2013, at 7:44 AM, "Holt, Jonathan" <<a href="mailto:jonathan.holt@Vanderbilt.Edu" target="_blank">jonathan.holt@Vanderbilt.Edu</a>> wrote:</div>
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I need help configuring my VM appliance to use my own PURL server. 
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<div>I am editing in OBO-edit,  after I upload my ontology to my VM appliance, it create a new Full ID that points to the OBOfoundry site.  Since I haven't yet created a namespace with OBOfoundry, this is causing problems. </div>

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<div>How do I configure the NCBO application to use my own PURL server and not the OBOfoundry site or the bioportal site? <span style="white-space:pre-wrap">
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<div>Jonathan Holt, DO, MS</div>
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<font color="#7F7F7F" size="3"><span style="font-size:12px">Assistant Professor of Biomedical Informatics and Medicine</span></font></div>
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<span style="font-size:12px;color:rgb(127,127,127);font-family:Calibri,sans-serif">Departments of Biomedical Informatics & </span><span style="color:rgb(127,127,127);font-family:Calibri,sans-serif">Medicine, Division
 of Genetic Medicine<br>
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<div><span style="color:rgb(127,127,127);font-family:Calibri,sans-serif;font-size:12px">Vanderbilt University Medical Center</span></div>
<div><font color="#7f7f7f" face="Calibri, sans-serif">2209 Garland Ave<br>
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<font color="#7F7F7F" size="3"><span style="font-size:12px">Phone:  <a href="tel:615-322-8683" value="+16153228683" target="_blank">615-322-8683</a></span></font></div>
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<font color="#7F7F7F" size="3"><span style="font-size:12px">Fax: <a href="tel:615-875-1424" value="+16158751424" target="_blank">615-875-1424</a></span></font></div>
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<font color="#7F7F7F" size="3"><span style="font-size:12px"><a href="mailto:jonathan.holt@vanderbilt.edu" style="color:purple" target="_blank">jonathan.holt@vanderbilt.edu</a></span></font></div>
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<font color="#7F7F7F" size="3"><span style="font-size:12px"><a href="http://dbmi.mc.vanderbilt.edu/people/holt.html" style="color:purple" target="_blank">http://dbmi.mc.vanderbilt.edu/people/holt.html</a></span></font></div>

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