<html><body><div style="color:#000; background-color:#fff; font-family:HelveticaNeue, Helvetica Neue, Helvetica, Arial, Lucida Grande, sans-serif;font-size:14pt"><div><span><span style="font-family: 'Helvetica Neue', 'Segoe UI', Helvetica, Arial, 'Lucida Grande', sans-serif; font-size: 13.333333969116211px;">Manuel,</span><br></span></div><div style="color: rgb(0, 0, 0); font-size: 18.88888931274414px; font-family: HelveticaNeue, 'Helvetica Neue', Helvetica, Arial, 'Lucida Grande', sans-serif; background-color: transparent; font-style: normal;"><span><span style="font-family: 'Helvetica Neue', 'Segoe UI', Helvetica, Arial, 'Lucida Grande', sans-serif; font-size: 13.333333969116211px;"><br></span></span></div><div style="color: rgb(0, 0, 0); font-size: 13.333333969116211px; font-family: 'Helvetica Neue', 'Segoe UI', Helvetica, Arial, 'Lucida Grande', sans-serif; background-color: transparent; font-style: normal;"><span><span style="font-family: 'Helvetica
 Neue', 'Segoe UI', Helvetica, Arial, 'Lucida Grande', sans-serif; font-size: 13.333333969116211px;">Thank you for the quick resolution of this issue...</span></span></div><div style="color: rgb(0, 0, 0); font-size: 13.333333969116211px; font-family: 'Helvetica Neue', 'Segoe UI', Helvetica, Arial, 'Lucida Grande', sans-serif; background-color: transparent; font-style: normal;"><span><span style="font-family: 'Helvetica Neue', 'Segoe UI', Helvetica, Arial, 'Lucida Grande', sans-serif; font-size: 13.333333969116211px;"><br></span></span></div><div style="color: rgb(0, 0, 0); font-size: 13.333333969116211px; font-family: 'Helvetica Neue', 'Segoe UI', Helvetica, Arial, 'Lucida Grande', sans-serif; background-color: transparent; font-style: normal;"><span><span style="font-family: 'Helvetica Neue', 'Segoe UI', Helvetica, Arial, 'Lucida Grande', sans-serif; font-size: 13.333333969116211px;">Al Shapiro</span></span></div><div class="yahoo_quoted"
 style="display: block;"> <br> <br> <div style="font-family: HelveticaNeue, 'Helvetica Neue', Helvetica, Arial, 'Lucida Grande', sans-serif; font-size: 14pt;"> <div style="font-family: HelveticaNeue, 'Helvetica Neue', Helvetica, Arial, 'Lucida Grande', sans-serif; font-size: 12pt;"> <div dir="ltr"> <font size="2" face="Arial"> On Saturday, February 1, 2014 9:55 AM, manuelso <manuelso@stanford.edu> wrote:<br> </font> </div>  <div class="y_msg_container"><div id="yiv0418974163"><div>Hi Al,<div><br clear="none"></div><div>Thanks for reporting this issue. This issue is resolved now.</div><div><br clear="none"></div><div>Manuel</div><div><br clear="none"></div><div><br clear="none"></div><div><br clear="none"></div><div><br clear="none"><div><div class="yiv0418974163yqt1398744575" id="yiv0418974163yqt54364"><div>On Jan 31, 2014, at 5:01 PM, Ray Fergerson <<a rel="nofollow" shape="rect" ymailto="mailto:ray.fergerson@stanford.edu" target="_blank"
 href="mailto:ray.fergerson@stanford.edu">ray.fergerson@stanford.edu</a>> wrote:</div><br clear="none" class="yiv0418974163Apple-interchange-newline"><blockquote type="cite"><div lang="EN-US" style="font-family: Helvetica; font-size: 12px; font-style: normal; font-variant: normal; font-weight: normal; letter-spacing: normal; line-height: normal; text-indent: 0px; text-transform: none; white-space: normal; word-spacing: 0px;"><div class="yiv0418974163WordSection1" style=""><div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman', serif;"><span style="font-size: 11pt; font-family: Calibri, sans-serif; color: rgb(31, 73, 125);">Sorry, my mistake. This is not working. We are looking into it. We did a release yesterday and it seems to have messed things up.</span></div><div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman', serif;"><span style="font-size: 11pt; font-family: Calibri, sans-serif;
 color: rgb(31, 73, 125);"> </span></div><div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman', serif;"><span style="font-size: 11pt; font-family: Calibri, sans-serif; color: rgb(31, 73, 125);">Ray</span></div><div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman', serif;"><a rel="nofollow" shape="rect" name="_MailEndCompose" href=""><span style="font-size: 11pt; font-family: Calibri, sans-serif; color: rgb(31, 73, 125);"> </span></a></div><div><div style="border-style:solid none none;border-top-color:rgb(181, 196, 223);border-top-width:1pt;padding:3pt 0in 0in;"><div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman', serif;"><b><span style="font-size: 10pt; font-family: Tahoma, sans-serif;">From:</span></b><span style="font-size: 10pt; font-family: Tahoma, sans-serif;"><span class="yiv0418974163Apple-converted-space"> </span>Ray Fergerson [<a
 rel="nofollow" shape="rect" ymailto="mailto:ray.fergerson@stanford.edu" target="_blank" href="mailto:ray.fergerson@stanford.edu">mailto:ray.fergerson@stanford.edu</a>]<span class="yiv0418974163Apple-converted-space"> </span><br clear="none"><b>Sent:</b><span class="yiv0418974163Apple-converted-space"> </span>Friday, January 31, 2014 4:59 PM<br clear="none"><b>To:</b><span class="yiv0418974163Apple-converted-space"> </span>Al Shapiro; Mona Salem; <a rel="nofollow" shape="rect" ymailto="mailto:bioontology-support@lists.stanford.edu" target="_blank" href="mailto:bioontology-support@lists.stanford.edu">bioontology-support@lists.stanford.edu</a><br clear="none"><b>Subject:</b><span class="yiv0418974163Apple-converted-space"> </span>RE: [bioontology-support] NCIT ontology not working?</span></div></div></div><div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman', serif;">  </div><div style="margin: 0in
 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman', serif;"><span style="font-size: 11pt; font-family: Calibri, sans-serif; color: rgb(31, 73, 125);">Annotation seems to be working. Please post a small snippet of text that should result in annotations.</span></div><div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman', serif;"><span style="font-size: 11pt; font-family: Calibri, sans-serif; color: rgb(31, 73, 125);"> </span></div><div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman', serif;"><span style="font-size: 11pt; font-family: Calibri, sans-serif; color: rgb(31, 73, 125);">Ray</span></div><div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman', serif;"><span style="font-size: 11pt; font-family: Calibri, sans-serif; color: rgb(31, 73, 125);"> </span></div><div><div style="border-style:solid none none;border-top-color:rgb(181, 196,
 223);border-top-width:1pt;padding:3pt 0in 0in;"><div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman', serif;"><b><span style="font-size: 10pt; font-family: Tahoma, sans-serif;">From:</span></b><span style="font-size: 10pt; font-family: Tahoma, sans-serif;"><span class="yiv0418974163Apple-converted-space"> </span>Al Shapiro [<a rel="nofollow" shape="rect" ymailto="mailto:als371@yahoo.com" target="_blank" href="mailto:als371@yahoo.com" style="color:purple;text-decoration:underline;">mailto:als371@yahoo.com</a>]<span class="yiv0418974163Apple-converted-space"> </span><br clear="none"><b>Sent:</b><span class="yiv0418974163Apple-converted-space"> </span>Friday, January 31, 2014 4:50 PM<br clear="none"><b>To:</b><span class="yiv0418974163Apple-converted-space"> </span>Ray Fergerson; Mona Salem;<span class="yiv0418974163Apple-converted-space"> </span><a rel="nofollow" shape="rect"
 ymailto="mailto:bioontology-support@lists.stanford.edu" target="_blank" href="mailto:bioontology-support@lists.stanford.edu" style="color:purple;text-decoration:underline;">bioontology-support@lists.stanford.edu</a><br clear="none"><b>Subject:</b><span class="yiv0418974163Apple-converted-space"> </span>Re: [bioontology-support] NCIT ontology not working?</span></div></div></div><div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman', serif;">  </div><div><div><div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman', serif; background-color: white;"><span style="font-size: 14pt; font-family: Helvetica, sans-serif;">Hi Guys,</span></div></div><div><div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman', serif;"><span style="font-size: 14pt; font-family: Helvetica, sans-serif;"> </span></div></div><div><div style="margin: 0in 0in 0.0001pt; font-size:
 12pt; font-family: 'Times New Roman', serif;"><span style="font-size: 14pt; font-family: Helvetica, sans-serif;">I just tried to Manually annotate some text from one of the G6G Abstracts, via the Bioportal Annotator function using NCIT and received:</span></div></div><div><div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman', serif;"><span style="font-size: 14pt; font-family: Helvetica, sans-serif;"> </span></div></div><div><div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman', serif;"><b><i><span style="font-size: 13.5pt; font-family: 'Trebuchet MS', sans-serif;">No annotations found<span class="yiv0418974163Apple-converted-space"> </span></span></i></b><span style="font-size: 13.5pt; font-family: 'Trebuchet MS', sans-serif;">message...</span><span style="font-size: 14pt; font-family: Helvetica, sans-serif;"></span></div></div><div><div style="margin: 0in 0in 0.0001pt; font-size:
 12pt; font-family: 'Times New Roman', serif;"><span style="font-size: 14pt; font-family: Helvetica, sans-serif;"> </span></div></div><div><div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman', serif;"><span style="font-size: 13.5pt; font-family: 'Trebuchet MS', sans-serif;">I did the same function yesterday, and it all worked A-okay...</span><span style="font-size: 14pt; font-family: 'Trebuchet MS', sans-serif;"></span></div></div><div><div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman', serif;"><span style="font-size: 13.5pt; font-family: 'Trebuchet MS', sans-serif;"> </span></div></div><div><div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman', serif;"><span style="font-size: 13.5pt; font-family: 'Trebuchet MS', sans-serif;">Looks like the NCIT ontology is down or the annotator function is down?</span></div></div><div><div style="margin: 0in 0in
 0.0001pt; font-size: 12pt; font-family: 'Times New Roman', serif;"><span style="font-size: 13.5pt; font-family: 'Trebuchet MS', sans-serif;"> </span></div></div><div><div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman', serif;"><span style="font-size: 13.5pt; font-family: 'Trebuchet MS', sans-serif;">Correction, I tried the same text, with different Ontologies (GEXO and MO), and received the same <b><i>No annotations found  </i></b>message...</span></div></div><div><div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman', serif;"><span style="font-size: 13.5pt; font-family: 'Trebuchet MS', sans-serif;"> </span></div></div><div><div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman', serif;"><span style="font-size: 13.5pt; font-family: 'Trebuchet MS', sans-serif;">Please advise...</span></div></div><div><div style="margin: 0in 0in 0.0001pt;
 font-size: 12pt; font-family: 'Times New Roman', serif;"><span style="font-size: 13.5pt; font-family: 'Trebuchet MS', sans-serif;"> </span></div></div><div><div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman', serif;"><span style="font-size: 13.5pt; font-family: 'Trebuchet MS', sans-serif;">Thank you,</span></div></div><div><div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman', serif;"><span style="font-size: 13.5pt; font-family: 'Trebuchet MS', sans-serif;"> </span></div></div><div><div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman', serif;"><span style="font-size: 13.5pt; font-family: 'Trebuchet MS', sans-serif;">Al Shapiro</span></div></div><div><div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman', serif;"><span style="font-size: 10pt; font-family: 'Trebuchet MS', sans-serif;"> </span></div></div><div><div
 style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman', serif;"><span style="font-size: 10pt; font-family: 'Trebuchet MS', sans-serif;"> </span></div></div><div><div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman', serif;"><span style="font-size: 14pt; font-family: Helvetica, sans-serif;"> </span></div></div><div><div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman', serif;"><span style="font-size: 10pt; font-family: 'Trebuchet MS', sans-serif;"> </span></div></div><div><div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman', serif;"><span style="font-size: 14pt; font-family: Helvetica, sans-serif;"> </span></div></div><div><div class="yiv0418974163MsoNormal" style="margin: 0in 0in 14pt; font-size: 12pt; font-family: 'Times New Roman', serif; background-color: white;"><span style="font-size: 14pt; font-family:
 Helvetica, sans-serif;"> </span></div><div><div><div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman', serif; background-color: white;"><span style="font-size: 10pt; font-family: Arial, sans-serif;">On Friday, January 31, 2014 4:30 PM, Ray Fergerson <<a rel="nofollow" shape="rect" ymailto="mailto:ray.fergerson@stanford.edu" target="_blank" href="mailto:ray.fergerson@stanford.edu" style="color:purple;text-decoration:underline;">ray.fergerson@stanford.edu</a>> wrote:</span><span style="font-family: Helvetica, sans-serif;"></span></div></div><div><div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman', serif; background-color: white;"><span style="font-family: Helvetica, sans-serif;">Mona,<br clear="none"><br clear="none">This sample code is setup to access our staging machine. This is almost<br clear="none">always a bad idea. Suggest you change the REST_URL to our production<br
 clear="none">machine (<a rel="nofollow" shape="rect" target="_blank" href="http://data.bioontology.org/">data.bioontology.org</a>) and try it again.<br clear="none"><br clear="none">Ray<br clear="none"><br clear="none">-----Original Message-----<br clear="none">From:<span class="yiv0418974163Apple-converted-space"> </span><a rel="nofollow" shape="rect" ymailto="mailto:bioontology-support-bounces@lists.stanford.edu" target="_blank" href="mailto:bioontology-support-bounces@lists.stanford.edu" style="color:purple;text-decoration:underline;">bioontology-support-bounces@lists.stanford.edu</a><br clear="none">[mailto:<a rel="nofollow" shape="rect" ymailto="mailto:bioontology-support-bounces@lists.stanford.edu" target="_blank" href="mailto:bioontology-support-bounces@lists.stanford.edu" style="color:purple;text-decoration:underline;">bioontology-support-bounces@lists.stanford.edu</a>] On Behalf Of Mona<br clear="none">Salem<br clear="none">Sent: Friday,
 January 31, 2014 3:39 PM<br clear="none">To:<span class="yiv0418974163Apple-converted-space"> </span><a rel="nofollow" shape="rect" ymailto="mailto:bioontology-support@lists.stanford.edu" target="_blank" href="mailto:bioontology-support@lists.stanford.edu" style="color:purple;text-decoration:underline;">bioontology-support@lists.stanford.edu</a><br clear="none">Subject: [bioontology-support] NCIT ontology not working?<br clear="none"><br clear="none">Hi Paul<br clear="none">I am using your code from github:<br clear="none">public class AnnotateText {<br clear="none"><br clear="none">    static final String REST_URL = "<a rel="nofollow" shape="rect" target="_blank" href="http://stagedata.bioontology.org/" style="color:purple;text-decoration:underline;">http://stagedata.bioontology.org</a>";<br clear="none">    static final String API_KEY = "";<br clear="none">    static final ObjectMapper mapper = new ObjectMapper();<br
 clear="none"><br clear="none">    public static void main(String[] args) throws Exception {<br clear="none">        String textToAnnotate = URLEncoder.encode("Melanoma is a malignant<br clear="none">tumor of melanocytes which are found predominantly in skin but also in the<br clear="none">bowel and the eye.", "ISO-8859-1");<br clear="none">       <span class="yiv0418974163Apple-converted-space"> </span><br clear="none">        // Get just annotations<br clear="none">        JsonNode annotations = jsonToNode(get(REST_URL +<br clear="none">"/annotator?text="<br clear="none">+ textToAnnotate));<br clear="none">        printAnnotations(annotations);<br clear="none">       <span class="yiv0418974163Apple-converted-space"> </span><br clear="none">        // Annotations with hierarchy<br
 clear="none">        annotations = jsonToNode(get(REST_URL +<br clear="none">"/annotator?max_level=3&text=" + textToAnnotate));<br clear="none">        printAnnotations(annotations);<br clear="none">    }<br clear="none"><br clear="none"><br clear="none">I changed the following line, to capture annotations from NCIT ontology<br clear="none">only.  It did not work:<br clear="none">JsonNode annotations = jsonToNode(get(REST_URL +<br clear="none">"/annotator?ontologies=NCIT&text=" + textToAnnotate)); <span class="yiv0418974163Apple-converted-space"> </span><br clear="none"><br clear="none"><br clear="none">Also, the REST_URL = "<a rel="nofollow" shape="rect" target="_blank" href="http://data.bioontology.org/" style="color:purple;text-decoration:underline;">http://data.bioontology.org</a>";  right?<br clear="none"><br clear="none">Thanks for any follow-up<br clear="none">Mona
 Nafoosi<br clear="none">   <span class="yiv0418974163Apple-converted-space"> </span><br clear="none"><br clear="none">-----Original Message-----<br clear="none">From:<span class="yiv0418974163Apple-converted-space"> </span><a rel="nofollow" shape="rect" ymailto="mailto:bioontology-support-bounces@lists.stanford.edu" target="_blank" href="mailto:bioontology-support-bounces@lists.stanford.edu" style="color:purple;text-decoration:underline;">bioontology-support-bounces@lists.stanford.edu</a><br clear="none">[mailto:<a rel="nofollow" shape="rect" ymailto="mailto:bioontology-support-bounces@lists.stanford.edu" target="_blank" href="mailto:bioontology-support-bounces@lists.stanford.edu" style="color:purple;text-decoration:underline;">bioontology-support-bounces@lists.stanford.edu</a>] On Behalf Of<br clear="none"><a rel="nofollow" shape="rect" ymailto="mailto:bioontology-support-request@lists.stanford.edu" target="_blank"
 href="mailto:bioontology-support-request@lists.stanford.edu" style="color:purple;text-decoration:underline;">bioontology-support-request@lists.stanford.edu</a><br clear="none">Sent: Friday, December 20, 2013 11:37 AM<br clear="none">To:<span class="yiv0418974163Apple-converted-space"> </span><a rel="nofollow" shape="rect" ymailto="mailto:bioontology-support@lists.stanford.edu" target="_blank" href="mailto:bioontology-support@lists.stanford.edu" style="color:purple;text-decoration:underline;">bioontology-support@lists.stanford.edu</a><br clear="none">Subject: bioontology-support Digest, Vol 68, Issue 40<br clear="none"><br clear="none">Send bioontology-support mailing list submissions to<br clear="none">   <span class="yiv0418974163Apple-converted-space"> </span><a rel="nofollow" shape="rect" ymailto="mailto:bioontology-support@lists.stanford.edu" target="_blank" href="mailto:bioontology-support@lists.stanford.edu"
 style="color:purple;text-decoration:underline;">bioontology-support@lists.stanford.edu</a><br clear="none"><br clear="none">To subscribe or unsubscribe via the World Wide Web, visit<br clear="none">   <span class="yiv0418974163Apple-converted-space"> </span><a rel="nofollow" shape="rect" target="_blank" href="https://mailman.stanford.edu/mailman/listinfo/bioontology-support" style="color:purple;text-decoration:underline;">https://mailman.stanford.edu/mailman/listinfo/bioontology-support</a><br clear="none">or, via email, send a message with subject or body 'help' to<br clear="none">   <span class="yiv0418974163Apple-converted-space"> </span><a rel="nofollow" shape="rect" ymailto="mailto:bioontology-support-request@lists.stanford.edu" target="_blank" href="mailto:bioontology-support-request@lists.stanford.edu" style="color:purple;text-decoration:underline;">bioontology-support-request@lists.stanford.edu</a><br
 clear="none"><br clear="none">You can reach the person managing the list at<br clear="none">   <span class="yiv0418974163Apple-converted-space"> </span><a rel="nofollow" shape="rect" ymailto="mailto:bioontology-support-owner@lists.stanford.edu" target="_blank" href="mailto:bioontology-support-owner@lists.stanford.edu" style="color:purple;text-decoration:underline;">bioontology-support-owner@lists.stanford.edu</a><br clear="none"><br clear="none">When replying, please edit your Subject line so it is more specific than<br clear="none">"Re: Contents of bioontology-support digest..."<br clear="none"><br clear="none"><br clear="none">Today's Topics:<br clear="none"><br clear="none">  1. Re: moving from the old Api to the new Api (Trish Whetzel)<br clear="none">  2. BioPortal support over the year end holidays (Ray Fergerson)<br clear="none">  3. Re: Internal server error for programmatic    search<br
 clear="none">      (Paul R Alexander)<br clear="none"><br clear="none"><br clear="none">----------------------------------------------------------------------<br clear="none"><br clear="none">Message: 1<br clear="none">Date: Fri, 20 Dec 2013 11:12:29 -0800<br clear="none">From: Trish Whetzel <<a rel="nofollow" shape="rect" ymailto="mailto:plwhetzel@gmail.com" target="_blank" href="mailto:plwhetzel@gmail.com" style="color:purple;text-decoration:underline;">plwhetzel@gmail.com</a>><br clear="none">To: Ray Fergerson <<a rel="nofollow" shape="rect" ymailto="mailto:ray.fergerson@stanford.edu" target="_blank" href="mailto:ray.fergerson@stanford.edu" style="color:purple;text-decoration:underline;">ray.fergerson@stanford.edu</a>><br clear="none">Cc: Maria Angeles Sanguino Gonzalez <<a rel="nofollow" shape="rect" ymailto="mailto:maria.sanguino@atos.net" target="_blank" href="mailto:maria.sanguino@atos.net"
 style="color:purple;text-decoration:underline;">maria.sanguino@atos.net</a>>,<br clear="none">    "<a rel="nofollow" shape="rect" ymailto="mailto:support@bioontology.org" target="_blank" href="mailto:support@bioontology.org" style="color:purple;text-decoration:underline;">support@bioontology.org</a>" <<a rel="nofollow" shape="rect" ymailto="mailto:support@bioontology.org" target="_blank" href="mailto:support@bioontology.org" style="color:purple;text-decoration:underline;">support@bioontology.org</a>><br clear="none">Subject: Re: [bioontology-support] moving from the old Api to the new<br clear="none">    Api<br clear="none">Message-ID:<br clear="none">   <span class="yiv0418974163Apple-converted-space"> </span><br clear="none"><CAE4f=<a rel="nofollow" shape="rect" ymailto="mailto:ng6cgMwpcXBOEYuwzU-m4Wv4XbwS6ivYYKtXaoWbWgD2Q@mail.gmail.com" target="_blank"
 href="mailto:ng6cgMwpcXBOEYuwzU-m4Wv4XbwS6ivYYKtXaoWbWgD2Q@mail.gmail.com" style="color:purple;text-decoration:underline;">ng6cgMwpcXBOEYuwzU-m4Wv4XbwS6ivYYKtXaoWbWgD2Q@mail.gmail.com</a>><br clear="none">Content-Type: text/plain; charset="windows-1252"<br clear="none"><br clear="none">Thanks Ray. I don't need updated mapping data yet, but was looking to see<br clear="none">if the mappings now more easily include how they were generated, e.g.<br clear="none">LOOM, BioPortal UI, dbxref, etc. and stumbled upon this issue.<br clear="none"><br clear="none">Is the type of process that generated the mapping included in the output<br clear="none">from this call:<br clear="none"><a rel="nofollow" shape="rect" target="_blank" href="http://data.bioontology.org/mappings?ontologies=NCIT,FMA" style="color:purple;text-decoration:underline;">http://data.bioontology.org/mappings?ontologies=NCIT,FMA</a><br clear="none"><br clear="none">Trish<br clear="none"><br
 clear="none"><br clear="none">On Fri, Dec 20, 2013 at 10:57 AM, Ray Fergerson<br clear="none"><<a rel="nofollow" shape="rect" ymailto="mailto:ray.fergerson@stanford.edu" target="_blank" href="mailto:ray.fergerson@stanford.edu" style="color:purple;text-decoration:underline;">ray.fergerson@stanford.edu</a>>wrote:<br clear="none"><br clear="none">> Trish,<br clear="none">><br clear="none">><br clear="none">><br clear="none">> We understand the source of this problem. Unfortunately it will take<span class="yiv0418974163Apple-converted-space"> </span><br clear="none">> some time to fix. The count is correct but the mappings are not<span class="yiv0418974163Apple-converted-space"> </span><br clear="none">> reliably returned. As a workaround, suggest you iterate though the<span class="yiv0418974163Apple-converted-space"> </span><br clear="none">> terms in the smaller of the ontologies and ask for mappings
 between<span class="yiv0418974163Apple-converted-space"> </span><br clear="none">> each term and any term in the other ontology.<br clear="none">><br clear="none">><br clear="none">><br clear="none">> This workaround is painful and slow but it should work. It is about<span class="yiv0418974163Apple-converted-space"> </span><br clear="none">> all that we can offer until we have addressed the underlying problem.<br clear="none">><br clear="none">><br clear="none">><br clear="none">> Ray<br clear="none">><br clear="none">><br clear="none">><br clear="none">> *From:*<span class="yiv0418974163Apple-converted-space"> </span><a rel="nofollow" shape="rect" ymailto="mailto:bioontology-support-bounces@lists.stanford.edu" target="_blank" href="mailto:bioontology-support-bounces@lists.stanford.edu" style="color:purple;text-decoration:underline;">bioontology-support-bounces@lists.stanford.edu</a><span
 class="yiv0418974163Apple-converted-space"> </span>[mailto:<br clear="none">><span class="yiv0418974163Apple-converted-space"> </span><a rel="nofollow" shape="rect" ymailto="mailto:bioontology-support-bounces@lists.stanford.edu" target="_blank" href="mailto:bioontology-support-bounces@lists.stanford.edu" style="color:purple;text-decoration:underline;">bioontology-support-bounces@lists.stanford.edu</a>] *On Behalf Of *Paul R<span class="yiv0418974163Apple-converted-space"> </span><br clear="none">> Alexander<br clear="none">> *Sent:* Friday, December 20, 2013 9:53 AM<br clear="none">> *To:* Trish Whetzel<br clear="none">> *Cc:* Maria Angeles Sanguino Gonzalez;<span class="yiv0418974163Apple-converted-space"> </span><a rel="nofollow" shape="rect" ymailto="mailto:support@bioontology.org" target="_blank" href="mailto:support@bioontology.org" style="color:purple;text-decoration:underline;">support@bioontology.org</a><span
 class="yiv0418974163Apple-converted-space"> </span>Support<br clear="none">> *Subject:* Re: [bioontology-support] moving from the old Api to the<span class="yiv0418974163Apple-converted-space"> </span><br clear="none">> new Api<br clear="none">><br clear="none">><br clear="none">><br clear="none">> This is a bug. We?ll be looking into it. Thanks for reporting.<br clear="none">><br clear="none">><br clear="none">><br clear="none">> Paul<br clear="none">><br clear="none">><br clear="none">><br clear="none">><br clear="none">><br clear="none">> On Dec 19, 2013, at 3:09 PM, Trish Whetzel <<a rel="nofollow" shape="rect" ymailto="mailto:plwhetzel@gmail.com" target="_blank" href="mailto:plwhetzel@gmail.com" style="color:purple;text-decoration:underline;">plwhetzel@gmail.com</a>> wrote:<br clear="none">><br clear="none">><br clear="none">><br clear="none">> Is the call:<br
 clear="none">><span class="yiv0418974163Apple-converted-space"> </span><a rel="nofollow" shape="rect" target="_blank" href="http://data.bioontology.org/mappings?ontologies=NCIT,FMA&apikey=YourAP" style="color:purple;text-decoration:underline;">http://data.bioontology.org/mappings?ontologies=NCIT,FMA&apikey=YourAP</a><br clear="none">> IKey intended to return all 1,937 mappings between FMA and NCIt? Only<br clear="none">> 1 mapping pair is returned.<br clear="none">><br clear="none">> On the BioPortal mappings page, after selecting NCIt the page lists a<span class="yiv0418974163Apple-converted-space"> </span><br clear="none">> count of 1,937 mappings, but when clicking on the link for FMA only 1<span class="yiv0418974163Apple-converted-space"> </span><br clear="none">> mapping pair is displayed.<br clear="none">><br clear="none">> Trish<br clear="none">><br clear="none">><br clear="none">><br
 clear="none">><br clear="none">><br clear="none">> On Thu, Dec 19, 2013 at 10:00 AM, Paul R Alexander <<span class="yiv0418974163Apple-converted-space"> </span><br clear="none">><span class="yiv0418974163Apple-converted-space"> </span><a rel="nofollow" shape="rect" ymailto="mailto:palexander@stanford.edu" target="_blank" href="mailto:palexander@stanford.edu" style="color:purple;text-decoration:underline;">palexander@stanford.edu</a>> wrote:<br clear="none">><br clear="none">> Nines,<br clear="none">><br clear="none">><br clear="none">><br clear="none">> We will update the documentation with mappings examples, thank you for<span class="yiv0418974163Apple-converted-space"> </span><br clear="none">> pointing out that there are none.<br clear="none">><br clear="none">><br clear="none">><br clear="none">> The specific call that would replace the one you were using is this:<br
 clear="none">><br clear="none">><span class="yiv0418974163Apple-converted-space"> </span><a rel="nofollow" shape="rect" target="_blank" href="http://data.bioontology.org/mappings?ontologies=NCIT,FMA" style="color:purple;text-decoration:underline;">http://data.bioontology.org/mappings?ontologies=NCIT,FMA</a><br clear="none">><br clear="none">><br clear="none">><br clear="none">> Paul<br clear="none">><br clear="none">><br clear="none">><br clear="none">><br clear="none">><br clear="none">> On Dec 19, 2013, at 3:22 AM, Maria Angeles Sanguino Gonzalez <<span class="yiv0418974163Apple-converted-space"> </span><br clear="none">><span class="yiv0418974163Apple-converted-space"> </span><a rel="nofollow" shape="rect" ymailto="mailto:maria.sanguino@atos.net" target="_blank" href="mailto:maria.sanguino@atos.net" style="color:purple;text-decoration:underline;">maria.sanguino@atos.net</a>> wrote:<br
 clear="none">><br clear="none">><br clear="none">><br clear="none">> Dear Biportal support team,<br clear="none">><br clear="none">><br clear="none">><br clear="none">> I?ve receive an email suggesting moving any code that accesses the old<span class="yiv0418974163Apple-converted-space"> </span><br clear="none">> API to the new API. I?m particularly interested in the mappings<span class="yiv0418974163Apple-converted-space"> </span><br clear="none">> resources and I was wondering:<br clear="none">><br clear="none">> -          When de new API (<a rel="nofollow" shape="rect" target="_blank" href="http://data.bioontology.org/metadata/Mapping" style="color:purple;text-decoration:underline;">http://data.bioontology.org/metadata/Mapping</a><br clear="none">concretely)<br clear="none">> will provide some examples of use.<br clear="none">><br clear="none">> -     
     And which is the equivalent method to the old method in<br clear="none">charge<br clear="none">> of provide mappings (unidirectional o bidirectional) between two<span class="yiv0418974163Apple-converted-space"> </span><br clear="none">> ontologies (an example of the old method)<br clear="none">><br clear="none">> o<br clear="none">><span class="yiv0418974163Apple-converted-space"> </span><a rel="nofollow" shape="rect" target="_blank" href="http://rest.bioontology.org/bioportal/virtual/mappings/ontologies?sour" style="color:purple;text-decoration:underline;">http://rest.bioontology.org/bioportal/virtual/mappings/ontologies?sour</a><br clear="none">> ceontology=1032&targetontology=1053&pagesize=500&pagenum=1&apikey=8b8e<br clear="none">> 7850-0dbb-43ba-b29d-b5ed5719532c<br clear="none">><br clear="none">><br clear="none">><br clear="none">> Many thanks for the excellent work and
 thanks for the suggestion.<br clear="none">><br clear="none">> Regards,<br clear="none">><br clear="none">> Nines<br clear="none">><br clear="none">><br clear="none">><br clear="none">> ------------------------------------------------------------------<br clear="none">> This e-mail and the documents attached are confidential and intended<span class="yiv0418974163Apple-converted-space"> </span><br clear="none">> solely for the addressee; it may also be privileged. If you receive<span class="yiv0418974163Apple-converted-space"> </span><br clear="none">> this e-mail in error, please notify the sender immediately and destroy<br clear="none">it.<br clear="none">> As its integrity cannot be secured on the Internet, the Atos group<span class="yiv0418974163Apple-converted-space"> </span><br clear="none">> liability cannot be triggered for the message content. Although the<span
 class="yiv0418974163Apple-converted-space"> </span><br clear="none">> sender endeavours to maintain a computer virus-free network, the<span class="yiv0418974163Apple-converted-space"> </span><br clear="none">> sender does not warrant that this transmission is virus-free and will<span class="yiv0418974163Apple-converted-space"> </span><br clear="none">> not be liable for any damages resulting from any virus transmitted.<br clear="none">><br clear="none">> Este mensaje y los ficheros adjuntos pueden contener informacion<span class="yiv0418974163Apple-converted-space"> </span><br clear="none">> confidencial destinada solamente a la(s) persona(s) mencionadas<span class="yiv0418974163Apple-converted-space"> </span><br clear="none">> anteriormente pueden estar protegidos por secreto profesional.<br clear="none">> Si usted recibe este correo electronico por error, gracias por<span
 class="yiv0418974163Apple-converted-space"> </span><br clear="none">> informar inmediatamente al remitente y destruir el mensaje.<br clear="none">> Al no estar asegurada la integridad de este mensaje sobre la red, Atos<span class="yiv0418974163Apple-converted-space"> </span><br clear="none">> no se hace responsable por su contenido. Su contenido no constituye<span class="yiv0418974163Apple-converted-space"> </span><br clear="none">> ningun compromiso para el grupo Atos, salvo ratificacion escrita por<span class="yiv0418974163Apple-converted-space"> </span><br clear="none">> ambas partes.<br clear="none">> Aunque se esfuerza al maximo por mantener su red libre de virus, el<span class="yiv0418974163Apple-converted-space"> </span><br clear="none">> emisor no puede garantizar nada al respecto y no sera responsable de<span class="yiv0418974163Apple-converted-space"> </span><br clear="none">> cualesquiera
 danos que puedan resultar de una transmision de virus.<br clear="none">><br clear="none">> ------------------------------------------------------------------<br clear="none">> _______________________________________________<br clear="none">> bioontology-support mailing list<br clear="none">><span class="yiv0418974163Apple-converted-space"> </span><a rel="nofollow" shape="rect" ymailto="mailto:bioontology-support@lists.stanford.edu" target="_blank" href="mailto:bioontology-support@lists.stanford.edu" style="color:purple;text-decoration:underline;">bioontology-support@lists.stanford.edu</a><br clear="none">><span class="yiv0418974163Apple-converted-space"> </span><a rel="nofollow" shape="rect" target="_blank" href="https://mailman.stanford.edu/mailman/listinfo/bioontology-support" style="color:purple;text-decoration:underline;">https://mailman.stanford.edu/mailman/listinfo/bioontology-support</a><br clear="none">><br
 clear="none">><br clear="none">><br clear="none">><br clear="none">> _______________________________________________<br clear="none">> bioontology-support mailing list<br clear="none">><span class="yiv0418974163Apple-converted-space"> </span><a rel="nofollow" shape="rect" ymailto="mailto:bioontology-support@lists.stanford.edu" target="_blank" href="mailto:bioontology-support@lists.stanford.edu" style="color:purple;text-decoration:underline;">bioontology-support@lists.stanford.edu</a><br clear="none">><span class="yiv0418974163Apple-converted-space"> </span><a rel="nofollow" shape="rect" target="_blank" href="https://mailman.stanford.edu/mailman/listinfo/bioontology-support" style="color:purple;text-decoration:underline;">https://mailman.stanford.edu/mailman/listinfo/bioontology-support</a><br clear="none">><br clear="none">><br clear="none">><br clear="none">><br clear="none">><br clear="none">--------------
 next part --------------<br clear="none">An HTML attachment was scrubbed...<br clear="none">URL:<br clear="none"><<a rel="nofollow" shape="rect" target="_blank" href="http://mailman.stanford.edu/pipermail/bioontology-support/attachments/201" style="color:purple;text-decoration:underline;">http://mailman.stanford.edu/pipermail/bioontology-support/attachments/201</a><br clear="none">31<br clear="none">220/9570d780/attachment-0001.html><br clear="none"><br clear="none">------------------------------<br clear="none"><br clear="none">Message: 2<br clear="none">Date: Fri, 20 Dec 2013 11:25:10 -0800 (PST)<br clear="none">From: Ray Fergerson <<a rel="nofollow" shape="rect" ymailto="mailto:ray.fergerson@stanford.edu" target="_blank" href="mailto:ray.fergerson@stanford.edu" style="color:purple;text-decoration:underline;">ray.fergerson@stanford.edu</a>><br clear="none">To: <<a rel="nofollow" shape="rect" ymailto="mailto:support@bioontology.org"
 target="_blank" href="mailto:support@bioontology.org" style="color:purple;text-decoration:underline;">support@bioontology.org</a>><br clear="none">Subject: [bioontology-support] BioPortal support over the year end<br clear="none">    holidays<br clear="none">Message-ID: <<a rel="nofollow" shape="rect" ymailto="mailto:30df73bc.00002df4.0000001c@BMIR-WIN8L-RF1.stanford.edu" target="_blank" href="mailto:30df73bc.00002df4.0000001c@BMIR-WIN8L-RF1.stanford.edu" style="color:purple;text-decoration:underline;">30df73bc.00002df4.0000001c@BMIR-WIN8L-RF1.stanford.edu</a>><br clear="none">Content-Type: text/plain; charset="us-ascii"<br clear="none"><br clear="none">Every year Stanford has a shutdown of all facilities at the end of the<br clear="none">year.<br clear="none">This year the shutdown is from Dec 21 until Jan 6.<br clear="none"><br clear="none"><br clear="none"><br clear="none">We will of course keep BioPortal running over the
 holidays. There will be<br clear="none">little other support available through this mailing list in this period.<br clear="none">We will only address problems that result in a system failure. We will<br clear="none">respond to all other bug reports and feature requests when we return the<br clear="none">week of Jan 6.<br clear="none"><br clear="none"><br clear="none"><br clear="none">We wish you all a happy holiday season and look forward to working with<br clear="none">you again in the new year.<br clear="none"><br clear="none"><br clear="none"><br clear="none">Ray<span class="yiv0418974163Apple-converted-space"> </span><br clear="none"><br clear="none">-------------- next part --------------<br clear="none">An HTML attachment was scrubbed...<br clear="none">URL:<br clear="none"><<a rel="nofollow" shape="rect" target="_blank" href="http://mailman.stanford.edu/pipermail/bioontology-support/attachments/201"
 style="color:purple;text-decoration:underline;">http://mailman.stanford.edu/pipermail/bioontology-support/attachments/201</a><br clear="none">31<br clear="none">220/429b8a1d/attachment-0001.html><br clear="none"><br clear="none">------------------------------<br clear="none"><br clear="none">Message: 3<br clear="none">Date: Fri, 20 Dec 2013 11:36:36 -0800<br clear="none">From: Paul R Alexander <<a rel="nofollow" shape="rect" ymailto="mailto:palexander@stanford.edu" target="_blank" href="mailto:palexander@stanford.edu" style="color:purple;text-decoration:underline;">palexander@stanford.edu</a>><br clear="none">To: Maxwell Neal <<a rel="nofollow" shape="rect" ymailto="mailto:mneal@u.washington.edu" target="_blank" href="mailto:mneal@u.washington.edu" style="color:purple;text-decoration:underline;">mneal@u.washington.edu</a>><br clear="none">Cc: "<a rel="nofollow" shape="rect" ymailto="mailto:support@bioontology.org" target="_blank"
 href="mailto:support@bioontology.org" style="color:purple;text-decoration:underline;">support@bioontology.org</a><span class="yiv0418974163Apple-converted-space"> </span>Support" <<a rel="nofollow" shape="rect" ymailto="mailto:support@bioontology.org" target="_blank" href="mailto:support@bioontology.org" style="color:purple;text-decoration:underline;">support@bioontology.org</a>><br clear="none">Subject: Re: [bioontology-support] Internal server error for<br clear="none">    programmatic    search<br clear="none">Message-ID: <<a rel="nofollow" shape="rect" ymailto="mailto:E42A2924-D7D4-416C-8672-C297E06BE507@stanford.edu" target="_blank" href="mailto:E42A2924-D7D4-416C-8672-C297E06BE507@stanford.edu" style="color:purple;text-decoration:underline;">E42A2924-D7D4-416C-8672-C297E06BE507@stanford.edu</a>><br clear="none">Content-Type: text/plain; charset=windows-1252<br clear="none"><br clear="none">You will
 need to pass along your API Key using the ?apikey=YOUR_APIKEY?<br clear="none">parameter when you do the request from code. It gets stored in a browser<br clear="none">cookie and so you may be able to access from your browser just fine.<br clear="none"><br clear="none">Here is some sample java code for doing search (The API key here gets set<br clear="none">in a header, but passing the apikey query string parameter works as well):<br clear="none"><a rel="nofollow" shape="rect" target="_blank" href="https://github.com/ncbo/ncbo_rest_sample_code/blob/master/java/src/Classes" style="color:purple;text-decoration:underline;">https://github.com/ncbo/ncbo_rest_sample_code/blob/master/java/src/Classes</a><br clear="none">Se<br clear="none">arch.java<br clear="none"><br clear="none">Paul<br clear="none"><br clear="none"><br clear="none">On Dec 19, 2013, at 12:16 PM, Maxwell Neal <<a rel="nofollow" shape="rect" ymailto="mailto:mneal@u.washington.edu"
 target="_blank" href="mailto:mneal@u.washington.edu" style="color:purple;text-decoration:underline;">mneal@u.washington.edu</a>> wrote:<br clear="none"><br clear="none">> Hi all,<br clear="none">><span class="yiv0418974163Apple-converted-space"> </span><br clear="none">> I am in the process of adapting some existing Java code that I use to<br clear="none">programmatically search ontologies in BioPortal.  When I try to open a<br clear="none">connection to the following BioPortal REST URL, I get an HTTP 500 error.<br clear="none">><span class="yiv0418974163Apple-converted-space"> </span><br clear="none">><span class="yiv0418974163Apple-converted-space"> </span><a rel="nofollow" shape="rect" target="_blank" href="http://data.bioontology.org/search?q=brainstem&ontologies=FMA&format=x"
 style="color:purple;text-decoration:underline;">http://data.bioontology.org/search?q=brainstem&ontologies=FMA&format=x</a><br clear="none">> ml&exact_match=0<br clear="none">><span class="yiv0418974163Apple-converted-space"> </span><br clear="none">> When I paste the same URL into my browser, I do get a successful<span class="yiv0418974163Apple-converted-space"> </span><br clear="none">> search<br clear="none">result.<br clear="none">><span class="yiv0418974163Apple-converted-space"> </span><br clear="none">> Is this really an error on the BioPortal side, as the HTTP code<span class="yiv0418974163Apple-converted-space"> </span><br clear="none">> indicates? (I've included a snippet of my code below, in case it's<br clear="none">> useful.)<br clear="none">><span class="yiv0418974163Apple-converted-space"> </span><br clear="none">> Many thanks,<br clear="none">><span
 class="yiv0418974163Apple-converted-space"> </span><br clear="none">> M<br clear="none">><span class="yiv0418974163Apple-converted-space"> </span><br clear="none">><span class="yiv0418974163Apple-converted-space"> </span><br clear="none">> String text = "brainstem";<br clear="none">> String bioportalID = "FMA";<br clear="none">> SAXBuilder builder = new SAXBuilder(); Document doc = null; text =<span class="yiv0418974163Apple-converted-space"> </span><br clear="none">> text.replace(" ", "+"); URL url = new URL(<br clear="none">>     "<a rel="nofollow" shape="rect" target="_blank" href="http://data.bioontology.org/search?q=" style="color:purple;text-decoration:underline;">http://data.bioontology.org/search?q=</a>"<br clear="none">>         + text + "&ontologies="<br clear="none">>         + bioportalID + "&format=xml" +
 "&exact_match=" +<br clear="none">exactmatch);               <span class="yiv0418974163Apple-converted-space"> </span><br clear="none">>            <span class="yiv0418974163Apple-converted-space"> </span><br clear="none">> System.out.println(url);<br clear="none">> URLConnection yc = url.openConnection(); yc.setReadTimeout(60000); //<span class="yiv0418974163Apple-converted-space"> </span><br clear="none">> Timeout after a minute BufferedReader in = new BufferedReader(new<span class="yiv0418974163Apple-converted-space"> </span><br clear="none">> InputStreamReader(yc.getInputStream()));<br clear="none">><span class="yiv0418974163Apple-converted-space"> </span><br clear="none">><span class="yiv0418974163Apple-converted-space"> </span><br clear="none">><span
 class="yiv0418974163Apple-converted-space"> </span><br clear="none">><span class="yiv0418974163Apple-converted-space"> </span><br clear="none">> ---------------------------------<br clear="none">> Maxwell Neal<br clear="none">><span class="yiv0418974163Apple-converted-space"> </span><br clear="none">> Post-doctoral researcher<br clear="none">> Department of Bioengineering<br clear="none">> University of Washington<br clear="none">><span class="yiv0418974163Apple-converted-space"> </span><a rel="nofollow" shape="rect" ymailto="mailto:mneal@uw.edu" target="_blank" href="mailto:mneal@uw.edu" style="color:purple;text-decoration:underline;">mneal@uw.edu</a><br clear="none">> ---------------------------------<br clear="none">><span class="yiv0418974163Apple-converted-space"> </span><br clear="none">><span class="yiv0418974163Apple-converted-space"> </span><br clear="none">><span
 class="yiv0418974163Apple-converted-space"> </span><br clear="none">><span class="yiv0418974163Apple-converted-space"> </span><br clear="none">><span class="yiv0418974163Apple-converted-space"> </span><br clear="none">><span class="yiv0418974163Apple-converted-space"> </span><br clear="none">><span class="yiv0418974163Apple-converted-space"> </span><br clear="none">><span class="yiv0418974163Apple-converted-space"> </span><br clear="none">> _______________________________________________<br clear="none">> bioontology-support mailing list<br clear="none">><span class="yiv0418974163Apple-converted-space"> </span><a rel="nofollow" shape="rect" ymailto="mailto:bioontology-support@lists.stanford.edu" target="_blank" href="mailto:bioontology-support@lists.stanford.edu" style="color:purple;text-decoration:underline;">bioontology-support@lists.stanford.edu</a><br clear="none">><span
 class="yiv0418974163Apple-converted-space"> </span><a rel="nofollow" shape="rect" target="_blank" href="https://mailman.stanford.edu/mailman/listinfo/bioontology-support" style="color:purple;text-decoration:underline;">https://mailman.stanford.edu/mailman/listinfo/bioontology-support</a><br clear="none"><br clear="none"><br clear="none"><br clear="none">------------------------------<br clear="none"><br clear="none">_______________________________________________<br clear="none">bioontology-support mailing list<br clear="none"><a rel="nofollow" shape="rect" ymailto="mailto:bioontology-support@lists.stanford.edu" target="_blank" href="mailto:bioontology-support@lists.stanford.edu" style="color:purple;text-decoration:underline;">bioontology-support@lists.stanford.edu</a><br clear="none"><a rel="nofollow" shape="rect" target="_blank" href="https://mailman.stanford.edu/mailman/listinfo/bioontology-support"
 style="color:purple;text-decoration:underline;">https://mailman.stanford.edu/mailman/listinfo/bioontology-support</a><br clear="none"><br clear="none"><br clear="none">End of bioontology-support Digest, Vol 68, Issue 40</span></div><div id="yiv0418974163yqtfd01123"><div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman', serif; background-color: white;"><span style="font-family: Helvetica, sans-serif;"><br clear="none">***************************************************<br clear="none"><br clear="none">_______________________________________________<br clear="none">bioontology-support mailing list<br clear="none"><a rel="nofollow" shape="rect" ymailto="mailto:bioontology-support@lists.stanford.edu" target="_blank" href="mailto:bioontology-support@lists.stanford.edu" style="color:purple;text-decoration:underline;">bioontology-support@lists.stanford.edu</a><br clear="none"><a rel="nofollow" shape="rect" target="_blank"
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