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</o:shapelayout></xml><![endif]--></head><body lang=FR link="#0563C1" vlink="#954F72"><div class=WordSection1><p class=MsoNormal>Hi all, <o:p></o:p></p><p class=MsoNormal><o:p> </o:p></p><p class=MsoNormal><span lang=EN-US>We have been starting to use our local VA and getting ready to change the Annotator code inside.<o:p></o:p></span></p><p class=MsoNormal><span lang=EN-US>We have a few questions for which answers ca save us long time ;) :<o:p></o:p></span></p><p class=MsoNormal><span lang=EN-US><o:p> </o:p></span></p><p class=MsoListParagraph style='text-indent:-18.0pt;mso-list:l0 level1 lfo1'><![if !supportLists]><span lang=EN-US><span style='mso-list:Ignore'>1.<span style='font:7.0pt "Times New Roman"'>       </span></span></span><![endif]><span lang=EN-US>Where do you suggest to check out the code from at the beginning ? From the NCBO GitHub or directly from the VA files? For instance, if we want to change the \bioportal_web_ui project to update the UI of our local BP. Should we get: <a href="https://github.com/ncbo/bioportal_web_ui">https://github.com/ncbo/bioportal_web_ui</a>  or <o:p></o:p></span></p><p class=MsoListParagraph><span lang=EN-US>/srv/rails/BioPortal/releases/bioportal_web_ui on the VA  or<o:p></o:p></span></p><p class=MsoListParagraph><span lang=EN-US>somewhere else ?<o:p></o:p></span></p><p class=MsoListParagraph><span lang=EN-US>The idea is to avoid any conflict if the code on GitHub is more recent than the one executed on the VA.<o:p></o:p></span></p><p class=MsoListParagraph><span lang=EN-US><o:p> </o:p></span></p><p class=MsoListParagraph style='text-indent:-18.0pt;mso-list:l0 level1 lfo1'><![if !supportLists]><span lang=EN-US><span style='mso-list:Ignore'>2.<span style='font:7.0pt "Times New Roman"'>       </span></span></span><![endif]><span lang=EN-US>What do you guys use for automatic deployment from GitHub to stage or production BP ? Maeven, or alike… any place we should look into on the VA?<o:p></o:p></span></p><p class=MsoNormal><span lang=EN-US><o:p> </o:p></span></p><p class=MsoListParagraph style='text-indent:-18.0pt;mso-list:l0 level1 lfo1'><![if !supportLists]><span lang=EN-US><span style='mso-list:Ignore'>3.<span style='font:7.0pt "Times New Roman"'>       </span></span></span><![endif]><span lang=EN-US>Where are we defining groups and categories for our ontologies ?<o:p></o:p></span></p><p class=MsoListParagraph><span lang=EN-US><o:p> </o:p></span></p><p class=MsoListParagraph style='text-indent:-18.0pt;mso-list:l0 level1 lfo1'><![if !supportLists]><span lang=EN-US><span style='mso-list:Ignore'>4.<span style='font:7.0pt "Times New Roman"'>       </span></span></span><![endif]><span lang=EN-US>Is there an admin interface (more advanced that the admin login) that enable to see what’s going on with the parsing of ontologies.. i.e., where to look if the parsing of an ontology fails to clean up or debug. Maybe also define groups, etc.<o:p></o:p></span></p><p class=MsoNormal><span lang=EN-US><o:p> </o:p></span></p><p class=MsoListParagraph style='text-indent:-18.0pt;mso-list:l0 level1 lfo1'><![if !supportLists]><span lang=EN-US><span style='mso-list:Ignore'>5.<span style='font:7.0pt "Times New Roman"'>       </span></span></span><![endif]><span lang=EN-US>Where should we look if we want to change what’s happening automatically when an ontology is added to BP via the UI. We specifically are interested in the MGREP dictionary creation step that we want to separate by “group”… in order to create/update a group specific dictionary file (in order for us to have 2 annotator on the same VA) ? <o:p></o:p></span></p><p class=MsoListParagraph><span lang=EN-US><o:p> </o:p></span></p><p class=MsoNormal><span lang=EN-US>Thank you by advance </span><span lang=EN-US style='font-family:Wingdings'>J</span><span lang=EN-US><o:p></o:p></span></p><p class=MsoNormal><span lang=EN-US>Clement, Emmanuel and Soumia<o:p></o:p></span></p><p class=MsoNormal><span lang=EN-US><o:p> </o:p></span></p><p class=MsoNormal><o:p> </o:p></p><p class=MsoNormal><span lang=EN-US style='mso-fareast-language:FR'>---------------------------------------------------------------------------------------------------------------------------<o:p></o:p></span></p><p class=MsoNormal><span lang=EN-US style='mso-fareast-language:FR'>Dr. <b>Clement JONQUET</b>  -  <i>PhD in Informatics  -  Assistant Professor<o:p></o:p></i></span></p><p class=MsoNormal><i><span lang=EN-US style='mso-fareast-language:FR'>PI of the <a href="http://www.lirmm.fr/sifr/"><span style='color:blue'>SIFR project</span></a>: Semantic Indexing of French Biomedical Data Resources (ANR, UM2, CNRS, IBC)<o:p></o:p></span></i></p><p class=MsoNormal><i><span lang=EN-US style='mso-fareast-language:FR'>Organizer of <a href="http://www.meetup.com/webscience-montpellier/"><span style='color:blue'>Web Science Montpellier</span></a> Meetup</span></i><span lang=EN-US style='mso-fareast-language:FR'><o:p></o:p></span></p><p class=MsoNormal><span lang=EN-US style='mso-fa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