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</o:shapelayout></xml><![endif]--></head><body lang=FR link=blue vlink=purple><div class=WordSection1><p class=MsoNormal><span style='font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D;mso-fareast-language:EN-US'>Hi, <o:p></o:p></span></p><p class=MsoNormal><span style='font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D;mso-fareast-language:EN-US'><o:p> </o:p></span></p><p class=MsoNormal><span lang=EN-US style='font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D;mso-fareast-language:EN-US'>By firing the 2 http calls (here under), the submissions and ontology are removed from BioPortal UI and from REST services responses, but the files are still there in :<o:p></o:p></span></p><p class=MsoNormal><span lang=EN-US style='font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D;mso-fareast-language:EN-US'>\srv\ncbo\repository\ACRO<o:p></o:p></span></p><p class=MsoNormal><span lang=EN-US style='font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D;mso-fareast-language:EN-US'><o:p> </o:p></span></p><p class=MsoNormal><span lang=EN-US style='font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D;mso-fareast-language:EN-US'>Is-it safe to delete them manually ?<o:p></o:p></span></p><p class=MsoNormal><span lang=EN-US style='font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D;mso-fareast-language:EN-US'>Should that be done automatically when calling the REST services ?<o:p></o:p></span></p><p class=MsoNormal><span lang=EN-US style='font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D;mso-fareast-language:EN-US'><o:p> </o:p></span></p><p class=MsoNormal><span lang=EN-US style='font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D;mso-fareast-language:EN-US'>Bye<o:p></o:p></span></p><p class=MsoNormal><span lang=EN-US style='font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D;mso-fareast-language:EN-US'>Clement<o:p></o:p></span></p><p class=MsoNormal><span lang=EN-US style='font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D;mso-fareast-language:EN-US'><o:p> </o:p></span></p><div><div style='border:none;border-top:solid #E1E1E1 1.0pt;padding:3.0pt 0cm 0cm 0cm'><p class=MsoNormal><b><span style='font-size:11.0pt;font-family:"Calibri","sans-serif"'>De :</span></b><span style='font-size:11.0pt;font-family:"Calibri","sans-serif"'> Clement Jonquet [mailto:jonquet@lirmm.fr] <br><b>Envoyé :</b> lundi 12 mai 2014 17:45<br><b>À :</b> 'Nikhil Kapoor'<br><b>Cc :</b> 'HUHNS, MICHAEL'; 'Pat O'Keefe'; 'support@bioontology.org'; 'Paul R Alexander'<br><b>Objet :</b> RE: [bioontology-support] Bioportal Image at USC, Columbia - how to delete ontologies<o:p></o:p></span></p></div></div><p class=MsoNormal><o:p> </o:p></p><p class=MsoNormal><span lang=EN-US style='font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D;mso-fareast-language:EN-US'>Dear all, <o:p></o:p></span></p><p class=MsoNormal><span lang=EN-US style='font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D;mso-fareast-language:EN-US'><o:p> </o:p></span></p><p class=MsoNormal><span lang=EN-US style='font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D;mso-fareast-language:EN-US'>An alternative way of doing it (thru the REST API) is:<o:p></o:p></span></p><p class=MsoNormal><span lang=EN-US style='font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D;mso-fareast-language:EN-US'><o:p> </o:p></span></p><p class=MsoNormal><span lang=EN-US style='font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D;mso-fareast-language:EN-US'>1. Delete submission(s) with:<o:p></o:p></span></p><p class=MsoNormal><span lang=EN-US style='font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D;mso-fareast-language:EN-US'><o:p> </o:p></span></p><p class=MsoNormal><span lang=EN-US style='font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D;mso-fareast-language:EN-US'>HTTP DELETE<o:p></o:p></span></p><p class=MsoNormal><span lang=EN-US style='font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D;mso-fareast-language:EN-US'><a href="http://appliancename.domain.edu:8082/ontologies/ACRO/submissions/1?apikey=youradminAPIkey">http://appliancename.domain.edu:8082/ontologies/ACRO/submissions/1?apikey=youradminAPIkey</a><o:p></o:p></span></p><p class=MsoNormal><span lang=EN-US style='font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D;mso-fareast-language:EN-US'><o:p> </o:p></span></p><p class=MsoNormal><span lang=EN-US style='font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D;mso-fareast-language:EN-US'>In which you replace 1 by your submission number and repeat for each submissions<o:p></o:p></span></p><p class=MsoNormal><span lang=EN-US style='font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D;mso-fareast-language:EN-US'><o:p> </o:p></span></p><p class=MsoNormal><span lang=EN-US style='font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D;mso-fareast-language:EN-US'>2. Delete ontology with:<o:p></o:p></span></p><p class=MsoNormal><span lang=EN-US style='font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D;mso-fareast-language:EN-US'><o:p> </o:p></span></p><p class=MsoNormal><span lang=EN-US style='font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D;mso-fareast-language:EN-US'>HTTP DELETE<o:p></o:p></span></p><p class=MsoNormal><span lang=EN-US style='font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D;mso-fareast-language:EN-US'><a href="http://appliancename.domain.edu:8082/ontologies/ACRO?apikey=youradminAPIkey&acronym=ACRO">http://appliancename.domain.edu:8082/ontologies/ACRO?apikey=youradminAPIkey&acronym=ACRO</a><o:p></o:p></span></p><p class=MsoNormal><span lang=EN-US style='font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D;mso-fareast-language:EN-US'><o:p> </o:p></span></p><p class=MsoNormal><span lang=EN-US style='font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D;mso-fareast-language:EN-US'>Should be working ;)<o:p></o:p></span></p><p class=MsoNormal><span lang=EN-US style='font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D;mso-fareast-language:EN-US'>Clement<o:p></o:p></span></p><p class=MsoNormal><span lang=EN-US style='font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D;mso-fareast-language:EN-US'><o:p> </o:p></span></p><p class=MsoNormal><span style='font-size:11.0pt;font-family:"Calibri","sans-serif"'><o:p> </o:p></span></p><p class=MsoNormal><span lang=EN-US style='font-size:11.0pt;font-family:"Calibri","sans-serif"'>---------------------------------------------------------------------------------------------------------------------------<o:p></o:p></span></p><p class=MsoNormal><span lang=EN-US style='font-size:11.0pt;font-family:"Calibri","sans-serif"'>Dr. <b>Clement JONQUET</b>  -  <i>PhD in Informatics  -  Assistant Professor<o:p></o:p></i></span></p><p class=MsoNormal><i><span lang=EN-US style='font-size:11.0pt;font-family:"Calibri","sans-serif"'>PI of the <a href="http://www.lirmm.fr/sifr/">SIFR project</a>: Semantic Indexing of French Biomedical Data Resources (ANR, UM2, CNRS, IBC)<o:p></o:p></span></i></p><p class=MsoNormal><i><span lang=EN-US style='font-size:11.0pt;font-family:"Calibri","sans-serif"'>Organizer of <a href="http://www.meetup.com/webscience-montpellier/">Web Science Montpellier</a> Meetup</span></i><span lang=EN-US style='font-size:11.0pt;font-family:"Calibri","sans-serif"'><o:p></o:p></span></p><p class=MsoNormal><span lang=EN-US style='font-size:11.0pt;font-family:"Calibri","sans-serif"'><o:p> </o:p></span></p><p class=MsoNormal><span lang=EN-US style='font-size:11.0pt;font-family:"Calibri","sans-serif"'><a href="mailto:jonquet@lirmm.fr">jonquet@lirmm.fr</a><o:p></o:p></span></p><p class=MsoNormal><span lang=EN-US style='font-size:11.0pt;font-family:"Calibri","sans-serif"'><a href="http://www.lirmm.fr/~jonquet">http://www.lirmm.fr/~jonquet</a> <o:p></o:p></span></p><p class=MsoNormal><span lang=EN-US style='font-size:11.0pt;font-family:"Calibri","sans-serif"'><o:p> </o:p></span></p><p class=MsoNormal><span lang=EN-US style='font-size:11.0pt;font-family:"Calibri","sans-serif"'>                <b>University of Montpellier</b>                          Tel:                      +33/4 67 14 97 43<b><o:p></o:p></b></span></p><p class=MsoNormal><span lang=EN-US style='font-size:11.0pt;font-family:"Calibri","sans-serif"'>                LIRMM                                                            Fax:                     +33/4 67  41 85 00           <o:p></o:p></span></p><p class=MsoNormal><span lang=EN-US style='font-size:11.0pt;font-family:"Calibri","sans-serif"'>                161 rue Ada                                                   Skype:                 clementpro<br>                34095 Montpellier Cdx 5                            Twitter:               <a href="http://twitter.com/jonquet_lirmm">@jonquet_lirmm</a><o:p></o:p></span></p><p class=MsoNormal><span lang=EN-US style='font-size:11.0pt;font-family:"Calibri","sans-serif"'>                France                                                            Google:               <a href="mailto:jonquet.lirmm@gmail.com">jonquet.lirmm@gmail.com</a><o:p></o:p></span></p><p class=MsoNormal><span lang=EN-US style='font-size:11.0pt;font-family:"Calibri","sans-serif"'>----------------------------------------------------------------------------------------------------------------------<o:p></o:p></span></p><p class=MsoNormal><!--[if gte vml 1]><v:shapetype id="_x0000_t75" coordsize="21600,21600" o:spt="75" o:preferrelative="t" path="m@4@5l@4@11@9@11@9@5xe" filled="f" stroked="f">
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</v:shape><![endif]--><![if !vml]><span style='mso-ignore:vglayout'><table cellpadding=0 cellspacing=0 align=left><tr><td width=19 height=102></td></tr><tr><td></td><td><img width=509 height=52 src="cid:image002.png@01CF9C2E.6D63CF00" v:shapes="Group_x0020_2"></td></tr></table></span><![endif]><span lang=EN-US style='font-size:11.0pt;font-family:"Calibri","sans-serif"'><o:p> </o:p></span></p><p class=MsoNormal><span style='font-size:11.0pt;font-family:"Calibri","sans-serif"'><o:p> </o:p></span></p><p class=MsoNormal><span style='font-size:11.0pt;font-family:"Calibri","sans-serif"'><o:p> </o:p></span></p><p class=MsoNormal><span lang=EN-US style='font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D;mso-fareast-language:EN-US'><o:p> </o:p></span></p><p class=MsoNormal><span lang=EN-US style='font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D;mso-fareast-language:EN-US'><o:p> </o:p></span></p><br style='mso-ignore:vglayout' clear=ALL><div><div style='border:none;border-top:solid #E1E1E1 1.0pt;padding:3.0pt 0cm 0cm 0cm'><p class=MsoNormal><b><span lang=EN-US style='font-size:11.0pt;font-family:"Calibri","sans-serif"'>De :</span></b><span lang=EN-US style='font-size:11.0pt;font-family:"Calibri","sans-serif"'> bioontology-support [</span><span style='font-size:11.0pt;font-family:"Calibri","sans-serif"'><a href="mailto:bioontology-support-bounces@lists.stanford.edu"><span lang=EN-US>mailto:bioontology-support-bounces@lists.stanford.edu</span></a></span><span lang=EN-US style='font-size:11.0pt;font-family:"Calibri","sans-serif"'>] <b>De la part de</b> Paul R Alexander<br><b>Envoyé :</b> samedi 10 mai 2014 02:05<br><b>À :</b> Nikhil Kapoor<br><b>Cc :</b> HUHNS, MICHAEL; Pat O'Keefe; </span><span style='font-size:11.0pt;font-family:"Calibri","sans-serif"'><a href="mailto:support@bioontology.org"><span lang=EN-US>support@bioontology.org</span></a></span><span lang=EN-US style='font-size:11.0pt;font-family:"Calibri","sans-serif"'><br><b>Objet :</b> Re: [bioontology-support] Bioportal Image at USC, Columbia - how to delete ontologies<o:p></o:p></span></p></div></div><p class=MsoNormal><span lang=EN-US><o:p> </o:p></span></p><div><p class=MsoNormal><span lang=EN-US>Nikhil,<o:p></o:p></span></p></div><div><p class=MsoNormal><span lang=EN-US><o:p> </o:p></span></p></div><div><p class=MsoNormal><span lang=EN-US>Please follow the instructions here for deleting an ontology:<o:p></o:p></span></p></div><div><p class=MsoNormal><a href="http://www.bioontology.org/wiki/index.php/Virtual_Appliance_FAQ#How_do_I_delete_an_ontology.3F"><span lang=EN-US>http://www.bioontology.org/wiki/index.php/Virtual_Appliance_FAQ#How_do_I_delete_an_ontology.3F</span></a><span lang=EN-US><o:p></o:p></span></p></div><div><p class=MsoNormal><span lang=EN-US><o:p> </o:p></span></p></div><div><p class=MsoNormal><span lang=EN-US>Let me know if you have any questions or problems.<o:p></o:p></span></p></div><div><p class=MsoNormal><span lang=EN-US><o:p> </o:p></span></p></div><div><p class=MsoNormal><span lang=EN-US>Paul<o:p></o:p></span></p></div><div><p class=MsoNormal><span lang=EN-US><o:p> </o:p></span></p></div><p class=MsoNormal><span lang=EN-US><o:p> </o:p></span></p><div><div><p class=MsoNormal><span lang=EN-US>On May 5, 2014, at 2:34 PM, Nikhil Kapoor <</span><a href="mailto:nikhilkapoor01@gmail.com"><span lang=EN-US>nikhilkapoor01@gmail.com</span></a><span lang=EN-US>> wrote:<o:p></o:p></span></p></div><p class=MsoNormal style='margin-bottom:12.0pt'><span lang=EN-US><o:p> </o:p></span></p><blockquote style='margin-top:5.0pt;margin-bottom:5.0pt'><div><div><div><p class=MsoNormal style='margin-bottom:12.0pt'><span lang=EN-US>Hi,<o:p></o:p></span></p></div><p class=MsoNormal style='margin-bottom:12.0pt'><span lang=EN-US>I am Nikhil and is part of a team working on a virtual image (using the one provided by bioportal) at the Computer Science Department at USC, Columbia SC. This project is being administered under the guidance of the Dept Chair Dr. Micheal N Huhns and Dr. Pat O'keefe.<o:p></o:p></span></p></div><p class=MsoNormal><span lang=EN-US>We have been successful in setting up the image and it pretty much is running smoothly. However, we cannot figure out how to delete an ontology. I have used the bioportal before and recall contacting the support team to get an ontology deleted. So, I understand there is something that we need to do as an admin.<br><br>Please through some light on this. Thanks!  <br clear=all><o:p></o:p></span></p><div><p class=MsoNormal><span lang=EN-US><o:p> </o:p></span></p><div><p class=MsoNormal><span lang=EN-US style='color:#0B5394'><br>-------------------</span><span lang=EN-US><o:p></o:p></span></p><div><p class=MsoNormal><span lang=EN-US style='color:#0B5394;background:white'>Nikhil Kapoor</span><span lang=EN-US><o:p></o:p></span></p></div><div><p class=MsoNormal><span lang=EN-US style='color:#0B5394;background:white'>Computer Science and Engineering</span><span lang=EN-US><o:p></o:p></span></p></div><div><p class=MsoNormal><span lang=EN-US style='color:#0B5394;background:white'>University of South Carolina</span><span lang=EN-US><o:p></o:p></span></p></div><div><p class=MsoNormal><span lang=EN-US style='color:#0B5394;background:white'>Columbia, SC, USA</span><span lang=EN-US><o:p></o:p></span></p></div></div></div></div><p class=MsoNormal><span lang=EN-US>_______________________________________________<br>bioontology-support mailing list<br></span><a href="mailto:bioontology-support@lists.stanford.edu"><span lang=EN-US>bioontology-support@lists.stanford.edu</span></a><span lang=EN-US><br></span><a href="https://mailman.stanford.edu/mailman/listinfo/bioontology-support"><span lang=EN-US>https://mailman.stanford.edu/mailman/listinfo/bioontology-support</span></a><span lang=EN-US><o:p></o:p></span></p></blockquote></div><p class=MsoNormal><span lang=EN-US><o:p> </o:p></span></p></div></body></html>