<div dir="ltr">I programmed an R script that can map a list of terms into all ontologies using NCBO Recommender (there is a score for each map). I hope somebody will find it useful:<div><br></div><div><a href="https://github.com/muntisa/RNCBO">https://github.com/muntisa/RNCBO</a><br>
</div><div><br></div><div>Best regards,</div><div class="gmail_extra"><div><div dir="ltr"><div dir="ltr"><span style="font-family:arial;font-size:small">Cristian R. Munteanu</span><br></div><div dir="ltr"><div style="font-family:arial;font-size:small">
<br></div><div style="font-family:arial;font-size:small">Senior Postdoctoral Researcher</div><div style="font-family:arial;font-size:small"><a href="http://www.enanomapper.net/" style="color:rgb(17,85,204)" target="_blank">www.enanomapper.net</a></div>
<div style="font-family:arial;font-size:small"><div>Department of Bioinformatics - BiGCaT<br>Faculty of Health, Life Sciences and Medicine<br></div><div>Maastricht University</div></div><div style="font-family:arial;font-size:small">
<a href="http://www.bigcat.unimaas.nl/" style="color:rgb(17,85,204)" target="_blank">www.bigcat.unimaas.nl</a><br></div><div style="font-family:arial;font-size:small">ORCID: 0000-0002-5628-2268</div></div></div></div>
<br><br><div class="gmail_quote">On Fri, Jul 11, 2014 at 9:03 PM,  <span dir="ltr"><<a href="mailto:bioontology-support-request@lists.stanford.edu" target="_blank">bioontology-support-request@lists.stanford.edu</a>></span> wrote:<br>
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Today's Topics:<br>
<br>
   1. Tools and scripts to generate mappings in a VA (Clement Jonquet)<br>
   2. [BioPortal] Feedback from HanfeiBao (<a href="mailto:support@bioontology.org">support@bioontology.org</a>)<br>
<br>
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Message: 1<br>
Date: Fri, 11 Jul 2014 18:47:53 +0200<br>
From: "Clement Jonquet" <<a href="mailto:jonquet@lirmm.fr">jonquet@lirmm.fr</a>><br>
To: <<a href="mailto:support@bioontology.org">support@bioontology.org</a>><br>
Subject: [bioontology-support] Tools and scripts to generate mappings<br>
        in a VA<br>
Message-ID: <07f101cf9d27$dbceeb10$936cc130$@<a href="http://lirmm.fr" target="_blank">lirmm.fr</a>><br>
Content-Type: text/plain; charset="us-ascii"<br>
<br>
Hi all,<br>
<br>
<br>
<br>
I am wondering where are the scripts/tools you guys used to generate<br>
mappings btw ontologies.<br>
<br>
Are they somewhere on GitHub or in the VA ?<br>
<br>
<br>
<br>
For instances:<br>
<br>
- I am hosting several OBO ontologies in my local appliance and they<br>
contains "xref:" properties that represent mappings to other ontologies.<br>
<br>
- I am hosting several UMLS ontologies that offer cui property that that<br>
represent mappings to other ontologies.<br>
<br>
<br>
<br>
Are those scripts available ?<br>
<br>
Can some of them be automated when an ontology is parsed to be included in<br>
BioPortal ?<br>
<br>
<br>
<br>
Thank you<br>
<br>
Clement<br>
<br>
<br>
<br>
<br>
<br>
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<br>
Dr. Clement JONQUET  -  PhD in Informatics  -  Assistant Professor<br>
<br>
PI of the  <<a href="http://www.lirmm.fr/sifr/" target="_blank">http://www.lirmm.fr/sifr/</a>> SIFR project: Semantic Indexing of<br>
French Biomedical Data Resources (ANR, UM2, CNRS, IBC)<br>
<br>
Organizer of  <<a href="http://www.meetup.com/webscience-montpellier/" target="_blank">http://www.meetup.com/webscience-montpellier/</a>> Web Science<br>
Montpellier Meetup<br>
<br>
<br>
<br>
 <mailto:<a href="mailto:jonquet@lirmm.fr">jonquet@lirmm.fr</a>> <a href="mailto:jonquet@lirmm.fr">jonquet@lirmm.fr</a><br>
<br>
 <<a href="http://www.lirmm.fr/~jonquet" target="_blank">http://www.lirmm.fr/~jonquet</a>> <a href="http://www.lirmm.fr/~jonquet" target="_blank">http://www.lirmm.fr/~jonquet</a><br>
<br>
<br>
<br>
                University of Montpellier                          Tel:<br>
<a href="tel:%2B33%2F4%2067%2014%2097%2043" value="+33467149743">+33/4 67 14 97 43</a><br>
<br>
                LIRMM<br>
Fax:                     <a href="tel:%2B33%2F4%2067%20%2041%2085%2000" value="+33467418500">+33/4 67  41 85 00</a><br>
<br>
                161 rue Ada<br>
Skype:                 clementpro<br>
                34095 Montpellier Cdx 5                            Twitter:<br>
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                France<br>
Google:                <mailto:<a href="mailto:jonquet.lirmm@gmail.com">jonquet.lirmm@gmail.com</a>><br>
<a href="mailto:jonquet.lirmm@gmail.com">jonquet.lirmm@gmail.com</a><br>
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Message: 2<br>
Date: Fri, 11 Jul 2014 09:50:54 -0700<br>
From: <a href="mailto:support@bioontology.org">support@bioontology.org</a><br>
To: <a href="mailto:support@bioontology.org">support@bioontology.org</a>,     <a href="mailto:hanfeib@gmail.com">hanfeib@gmail.com</a><br>
Subject: [bioontology-support] [BioPortal] Feedback from HanfeiBao<br>
Message-ID:<br>
        <53c015ee56189_76083fb10ba4fd4816f@ncbo-prd-app-18.stanford.edu.tmail><br>
Content-Type: text/plain; charset=utf-8<br>
<br>
<br>
Name: HanfeiBao<br>
<br>
Email: <a href="mailto:hanfeib@gmail.com">hanfeib@gmail.com</a><br>
<br>
Location: <a href="http://bioportal.bioontology.org/ontologies/HIVO004" target="_blank">http://bioportal.bioontology.org/ontologies/HIVO004</a><br>
<br>
Comment:<br>
Hi, I have made 3 uploads today, but the first 2 uploads are mistakes (only the last one is correct). Please help me to delete the mistake uploads.<br>
<br>
Thank you.<br>
<br>
Hanfei bao<br>
(<a href="mailto:mail%3Ahanfeib@gmail.com">mail:hanfeib@gmail.com</a> )<br>
<br>
<br>
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Subject: Digest Footer<br>
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End of bioontology-support Digest, Vol 75, Issue 15<br>
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</blockquote></div><br></div></div>