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Hello Laia,
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<div class="">I looked at your latest ontology source file (HORD_all_2017_08_07_scenarios.owl). There are still a number of problems with the import statements.</div>
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<div class="">1). It’s not valid to use a BioPortal REST API call as a download URL for the location of an ontology that you’d like to import. The import statements on lines 21 and 23 in your ontology file will result in not found errors:</div>
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<div class=""><owl:imports rdf:resource="<a href="http://data.bioontology.org/ontologies/ICF/submissions/3/download?apikey=eb8ef13c-ae88-42a5-b6f5-39c93d736688" class="">http://data.bioontology.org/ontologies/ICF/submissions/3/download?apikey=eb8ef13c-ae88-42a5-b6f5-39c93d736688</a>"/></div>
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<div class=""><owl:imports rdf:resource="<a href="http://data.bioontology.org/ontologies/ORDO/submissions/11/download?apikey=eb8ef13c-ae88-42a5-b6f5-39c93d736688”/" class="">http://data.bioontology.org/ontologies/ORDO/submissions/11/download?apikey=eb8ef13c-ae88-42a5-b6f5-39c93d736688”/</a>></div>
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<div class="">This is true not only for BioPortal, but for other ontology editing environments as well. If I open your ontology in the Protege ontology editing environment [1], you will see errors for both of those imports:</div>
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<div class=""><img apple-inline="yes" id="6AFA93EA-D917-44A0-BCA6-B6D45AF492A6" src="cid:F229D349-E469-46E9-A15B-5D1CC5550BFA@stanford.edu" class=""><img apple-inline="yes" id="2C295C5E-6AB0-44B3-B112-0FDB7E609B64" src="cid:27C78D6C-8B9A-4ADD-8CD1-A07D94EB0713@stanford.edu" class=""></div>
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<div class="">2). Line 26 contains another invalid import statement:</div>
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<div class=""><owl:imports rdf:resource="<a href="http://www.owl-ontologies.com/unnamed.owl" class="">http://www.owl-ontologies.com/unnamed.owl</a>"/></div>
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<div class="">… which has a URL that doesn’t resolve to anything.</div>
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<div class="">Kind regards,</div>
<div class="">Jennifer</div>
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<div class="">[1] <a href="http://protege.stanford.edu/products.php" class="">http://protege.stanford.edu/products.php</a></div>
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<div class="">On Aug 6, 2017, at 10:21 PM, Laia Subirats <<a href="mailto:laia.subirats@gmail.com" class="">laia.subirats@gmail.com</a>> wrote:</div>
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<div class="">Hi John,<br class="">
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I changed the references and now there is not a parsing problem anymore. However, the metrics do not appear.<br class="">
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Cheers,<br class="">
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<div class="gmail_extra">Laia Subirats<br class="">
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<div class="gmail_quote">On Mon, Aug 7, 2017 at 1:40 AM, John Graybeal<span class="Apple-converted-space"> </span><span dir="ltr" class=""><<a href="mailto:jgraybeal@stanford.edu" target="_blank" class="">jgraybeal@stanford.edu</a>></span><span class="Apple-converted-space"> </span>wrote:<br class="">
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<div style="word-wrap: break-word;" class="">Hi Laia, 
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<div class="">Sorry for the trouble you are having.  Usually that message indicates there has been a problem parsing the ontology, and you can try verifying the ontology parses with Protege or WebProtege as a next step.</div>
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<div class="">In this case, a quick look at the error log indicated two issues:</div>
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<div class="">* "OWL_IMPORT_MISSING:<span class="Apple-converted-space"> </span><a href="http://who.int/icf" target="_blank" class="">http://who.int/icf</a>"</div>
<div class="">* "OWL_IMPORT_MISSING:<span class="Apple-converted-space"> </span><a href="http://www.orpha.net/version2.4" target="_blank" class="">http://www.orpha.net/version2.<wbr class="">4</a>"</div>
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<div class="">A quick suggestion (sorry, no time today to verify myself) is to check to confirm that those two ontologies are indeed at those locations, and if they are not, change the references in the source ontology to point to correct locations.</div>
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<div class="">If you are still having trouble after that, please send another note indicating your latest understanding, and our team will try to help. Thanks.</div>
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<div class="">John</div>
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<div class="">On Aug 5, 2017, at 9:52 PM, Laia Subirats <<a href="mailto:laia.subirats@gmail.com" target="_blank" class="">laia.subirats@gmail.com</a>> wrote:</div>
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<div class="">Dear Sir/Madam,<br class="">
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I would like to see the<span class="Apple-converted-space"> </span><span class="m_8729106135744704153gmail-il">metrics</span><span class="Apple-converted-space"> </span>of my ontology in<span class="Apple-converted-space"> </span><a href="http://bioportal.bioontology.org/ontologies/PMR" target="_blank" class="">http://bioportal.bioontology.<wbr class="">org/ontologies/HORD</a>,
 I do not know if there is any problem. I see that there is a "<span class="m_8729106135744704153gmail-ontology_submission_status">(Uploaded, Error Rdf)" but I do not see the problem.<br class="">
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Yours faithfully,<br class="">
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<div class="m_8729106135744704153gmail_signature">Laia Subirats </div>
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<div class="">John Graybeal</div>
<div class="">Technical Program Manager</div>
<div class="">Center for Expanded Data Annotation and Retrieval /+/ NCBO BioPortal</div>
<div class="">Stanford Center for Biomedical Informatics Research<br class="">
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--<span class="Apple-converted-space"> </span><br class="">
<div class="gmail_signature" data-smartmail="gmail_signature">Laia Subirats </div>
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