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Venkat,
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<div class="">We do not have an example in R in our repository (examples are at <a href="https://github.com/ncbo/ncbo_rest_sample_code" class="">https://github.com/ncbo/ncbo_rest_sample_code</a>) that I am aware of.
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<div class="">However, the thread in the support list archives at <a href="http://ncbo-support.2288202.n4.nabble.com/bioontology-support-API-Example-Code-in-R-td4655378.html" class="">
http://ncbo-support.2288202.n4.nabble.com/bioontology-support-API-Example-Code-in-R-td4655378.html</a> has quite a bit more information that may be useful.</div>
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<div class="">In addition, OntoCat (described in "ontoCAT: an R package for ontology traversal and search",
<a href="https://academic.oup.com/bioinformatics/article/27/17/2468/223268" class="">
https://academic.oup.com/bioinformatics/article/27/17/2468/223268</a>) is written in R and accesses BIoPortal. So you may find some useful code in that source as well.</div>
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<div class="">John</div>
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<div class="">On Aug 9, 2018, at 8:49 AM, <a href="mailto:support@bioontology.org" class="">
support@bioontology.org</a> wrote:</div>
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<p class="">Name: Venkat </p>
<p class="">Email: <a href="mailto:gadepallivs@vcu.edu" class="">gadepallivs@vcu.edu</a>
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<p class="">Location: http%3A%2F%<a href="http://2Fbioportal.bioontology.org" class="">2Fbioportal.bioontology.org</a>%2F
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<strong class="">Feedback:</strong> </p>
<p class="">I am an R user, do you have an example of downloading data using R? <br class="">
I am interested in the complete lineage of Microorganism/Prokaryote/bacteria lineage ...
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Trying to convert each branch into a row, however because of cyclic network I am failing to do so.
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<p class="">Wondering if there is an easier way to download the network into a table format?</p>
<p class="">appreciate your inputs</p>
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_______________________________________________<br class="">
bioontology-support mailing list<br class="">
<a href="mailto:bioontology-support@lists.stanford.edu" class="">bioontology-support@lists.stanford.edu</a><br class="">
https://mailman.stanford.edu/mailman/listinfo/bioontology-support<br class="">
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<div class="">John Graybeal</div>
<div class="">Technical Program Manager</div>
<div class="">Center for Expanded Data Annotation and Retrieval /+/ NCBO BioPortal</div>
<div class="">Stanford Center for Biomedical Informatics Research<br class="">
650-736-1632<br class="">
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