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Hello,
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<div class="">I’ve been attempting to load / examine your ontology outside of the BioPortal system. I used a programmatic approach with the OWL API [1], and also tried manually opening the ontology file in the Protege ontology editing application [2]. In both
 cases, there are a number of errors. If you happen to use Protege, you can see them via Window | Show log… menu:</div>
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<div class=""><img apple-inline="yes" id="EAD596B0-0C11-4AC9-9098-82E1414F3F41" src="cid:A1E90BDA-21B5-4F1C-8AED-BD3BF89522EB@stanford.edu" class=""></div>
<div class="">Here is the complete text of one of the errors:</div>
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<div class="">ERROR  16:16:32  Attempt to transform an axiom to correct misuse of properties failed. Property replacement: {<<a href="http://xmlns.com/foaf/0.1/name" class="">http://xmlns.com/foaf/0.1/name</a>>=<<a href="http://xmlns.com/foaf/0.1/name" class="">http://xmlns.com/foaf/0.1/name</a>>,
 <<a href="http://www.w3.org/2008/05/skos#prefLabel" class="">http://www.w3.org/2008/05/skos#prefLabel</a>>=<<a href="http://www.w3.org/2008/05/skos#prefLabel" class="">http://www.w3.org/2008/05/skos#prefLabel</a>>, <<a href="http://www.w3.org/2008/05/skos#hiddenLabel" class="">http://www.w3.org/2008/05/skos#hiddenLabel</a>>=<<a href="http://www.w3.org/2008/05/skos#hiddenLabel" class="">http://www.w3.org/2008/05/skos#hiddenLabel</a>>,
 <<a href="http://www.w3.org/2008/05/skos#definition" class="">http://www.w3.org/2008/05/skos#definition</a>>=<<a href="http://www.w3.org/2008/05/skos#definition" class="">http://www.w3.org/2008/05/skos#definition</a>>, <<a href="http://www.w3.org/2008/05/skos#altLabel" class="">http://www.w3.org/2008/05/skos#altLabel</a>>=<<a href="http://www.w3.org/2008/05/skos#altLabel" class="">http://www.w3.org/2008/05/skos#altLabel</a>>},
 axiom: AnnotationAssertion(<<a href="http://www.w3.org/2008/05/skos#definition" class="">http://www.w3.org/2008/05/skos#definition</a>> <<a href="http://www.w3.org/2008/05/skos#hasTopConcept" class="">http://www.w3.org/2008/05/skos#hasTopConcept</a>> "A top
 level concept in the concept scheme."@en), error: uk.ac.manchester.cs.owl.owlapi.OWLLiteralImplPlain cannot be cast to org.semanticweb.owlapi.model.IRI</div>
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<div class="">We can more readily help with getting an ontology uploaded / displaying properly in BioPortal when parsing errors like this aren’t present.</div>
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<div class="">Kind regards,</div>
<div class="">Jennifer</div>
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<div class="">[1] <a href="http://owlcs.github.io/owlapi/" class="">http://owlcs.github.io/owlapi/</a></div>
<div class="">[2] <a href="https://protege.stanford.edu/" class="">https://protege.stanford.edu/</a></div>
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<div class="">On Sep 30, 2019, at 5:50 AM, <a href="mailto:support@bioontology.org" class="">
support@bioontology.org</a> wrote:</div>
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<p class="">Name: fathalla </p>
<p class=""><a href="mailto:sm_fathalla@yahoo.com" class="">Email: sm_fathalla@yahoo.com</a>
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<p class="">Location: http%3A%2F%<a href="http://2Fbioportal.bioontology.org" class="">2Fbioportal.bioontology.org</a>%2Fontologies%2FMODSCI%3Fp%3Dclasses%26conceptid%3Dhttp%253A%252F%<a href="http://252Fwww.w3.org" class="">252Fwww.w3.org</a>%252F2003%252F01%252Fgeo%252Fwgs84_pos%2523SpatialThing
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<strong class="">Feedback:</strong> </p>
<p class="">class names for my ontology do not appear well : <a href="http://bioportal.bioontology.org/ontologies/MODSCI/" class="">
http://bioportal.bioontology.org/ontologies/MODSCI/</a></p>
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_______________________________________________<br class="">
bioontology-support mailing list<br class="">
<a href="mailto:bioontology-support@lists.stanford.edu" class="">bioontology-support@lists.stanford.edu</a><br class="">
https://mailman.stanford.edu/mailman/listinfo/bioontology-support<br class="">
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