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Sorry about that Rakesh - I meant to send a link to this script in our sample code repository:
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<div class=""><a href="https://github.com/ncbo/ncbo_rest_sample_code/blob/master/ruby/bioportal_ontologies_import.rb" class="">https://github.com/ncbo/ncbo_rest_sample_code/blob/master/ruby/bioportal_ontologies_import.rb</a></div>
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<div class="">On Aug 11, 2020, at 6:31 PM, Rakesh Nagarajan <<a href="mailto:rakesh@pieriandx.com" class="">rakesh@pieriandx.com</a>> wrote:</div>
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<div dir="ltr" class="">Jennifer,<input name="virtru-metadata" type="hidden" value="{"email-policy":{"state":"closed","expirationUnit":"days","disableCopyPaste":false,"disablePrint":false,"disableForwarding":false,"enableNoauth":false,"persistentProtection":false,"expandedWatermarking":false,"expires":false,"isManaged":false},"attachments":{},"compose-id":"1","compose-window":{"secure":false}}" class="">
<div class="">     Thanks! Can you confirm the last link where you refer to a script but that link is the same as the previous link?</div>
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<div class="">Thanks,</div>
<div class="">Rakesh</div>
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<div dir="ltr" class="gmail_attr">On Tue, Aug 11, 2020 at 6:18 PM Jennifer Leigh Vendetti <<a href="mailto:vendetti@stanford.edu" class="">vendetti@stanford.edu</a>> wrote:<br class="">
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<div style="overflow-wrap: break-word;" class="">Hi Rakesh,
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<div class="">On Aug 10, 2020, at 5:18 PM, <a href="mailto:support@bioontology.org" target="_blank" class="">
support@bioontology.org</a> wrote:</div>
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<p class="">Name: rakesh </p>
<p class=""><a href="mailto:rakesh@pieriandx.com" target="_blank" class="">Email: rakesh@pieriandx.com</a>
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<p class="">Location: https%3A%2F%<a href="http://2fbioportal.bioontology.org/" target="_blank" class="">2Fbioportal.bioontology.org</a>%2F
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<strong class="">Feedback:</strong> </p>
<p class="">Hello, <br class="">
I am using v2.5 of the Ontoportal appliance and have successfully loaded NCIT a few times now. I am now attempting to load SNOMED-CT after conversion from the UMLS using umls2rdf as a .ttl file. I have selected UMLS as the format but I have now tried twice
 to upload via UI and the server threw an error saying 'something went wrong and administrators have been notified. However I dont know what happened. Are there logs on the server to check?
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<div class="">There are some instructions for locating log files here:</div>
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<div class=""><a href="https://ontoportal.github.io/administration/ontologies/submitting_ontologies/#is-there-a-log-file-for-parsing" target="_blank" class="">https://ontoportal.github.io/administration/ontologies/submitting_ontologies/#is-there-a-log-file-for-parsing</a></div>
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<p class="">Any other ideas to help troubleshoot? Finally are there commands to load directly on the server I may use?</p>
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<div class="">I’m not certain this is what you’re asking for, but you can manually re-parse an ontology submission using this methodology:</div>
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<div class=""><a href="https://ontoportal.github.io/administration/ontologies/submitting_ontologies/#manually-reparsing-using-the-ruby-console" target="_blank" class="">https://ontoportal.github.io/administration/ontologies/submitting_ontologies/#manually-reparsing-using-the-ruby-console</a></div>
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<div class="">It’s also possible to upload ontologies programmatically. An appliance user submitted the following script to our code sample repository:</div>
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<div class=""><a href="https://ontoportal.github.io/administration/ontologies/submitting_ontologies/#manually-reparsing-using-the-ruby-console" target="_blank" class="">https://ontoportal.github.io/administration/ontologies/submitting_ontologies/#manually-reparsing-using-the-ruby-console</a></div>
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<div class="">It’s a script that imports ontologies from on appliance instance to another, which is not what you’re doing. However, I thought that some portions of the code might be of interest to you.</div>
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<div class="">Kind regards,</div>
<div class="">Jennifer</div>
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