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Thank you John !!</div>
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Everything looks OK !!</div>
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I will check BioPortal after our next build,</div>
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planned for the week after Thanksgiving.</div>
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Cheers,</div>
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Lynn</div>
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<div id="divRplyFwdMsg" dir="ltr"><font face="Calibri, sans-serif" style="font-size:11pt" color="#000000"><b>From:</b> John Graybeal <jgraybeal@stanford.edu><br>
<b>Sent:</b> Tuesday, November 17, 2020 2:45 AM<br>
<b>To:</b> Schriml, Lynn <lschriml@som.umaryland.edu><br>
<b>Cc:</b> NCBO User Support <support@bioontology.org><br>
<b>Subject:</b> Re: [bioontology-support] [BioPortal] Feedback from Lynn Schriml</font>
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<div class="" style="word-wrap:break-word; line-break:after-white-space">Lynn,
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<div class="">It looks like the new ontology is parsed, has the new metrics, and produces the new values.
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<div class="">Can you have a look and let me know if anything seems amiss?</div>
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<div class="">Also, if you can drop me a line when the next update happens, or just check BioPortal the next day and see if it has updated correctly, I'd appreciate it.</div>
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<div class="">Thanks for checking up on BioPortal, appreciate it!</div>
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<div class="">John<br class="">
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<blockquote type="cite" class="">
<div class="">On Nov 16, 2020, at 12:12 PM, Schriml, Lynn <<a href="mailto:lschriml@som.umaryland.edu" class="">lschriml@som.umaryland.edu</a>> wrote:</div>
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Hello John,</div>
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Either is fine with me. </div>
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Much appreciated !!</div>
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Cheers,</div>
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Lynn</div>
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<font face="Calibri, sans-serif" class="" style="font-size:11pt"><b class="">From:</b><span class="x_Apple-converted-space"> </span>John Graybeal <<a href="mailto:jgraybeal@stanford.edu" class="">jgraybeal@stanford.edu</a>><br class="">
<b class="">Sent:</b><span class="x_Apple-converted-space"> </span>Monday, November 16, 2020 1:39 PM<br class="">
<b class="">To:</b><span class="x_Apple-converted-space"> </span>NCBO User Support <<a href="mailto:support@bioontology.org" class="">support@bioontology.org</a>><br class="">
<b class="">Cc:</b><span class="x_Apple-converted-space"> </span>Schriml, Lynn <<a href="mailto:lschriml@som.umaryland.edu" class="">lschriml@som.umaryland.edu</a>><br class="">
<b class="">Subject:</b><span class="x_Apple-converted-space"> </span>Re: [bioontology-support] [BioPortal] Feedback from Lynn Schriml</font>
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Lynn,
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<div class="">can you give us the IRI that you want us to use?  I would expect it's either of these:</div>
<div class="">- <a href="https://nam11.safelinks.protection.outlook.com/?url=https%3A%2F%2Fraw.githubusercontent.com%2FDiseaseOntology%2FHumanDiseaseOntology%2Fmain%2Fsrc%2Fontology%2Fdoid.owl&data=04%7C01%7Clschriml%40som.umaryland.edu%7C7cac52cb769f4897423008d88acccd57%7C717009a620de461a88940312a395cac9%7C0%7C1%7C637411960116529403%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C2000&sdata=Z%2BS828JhAkMjnbKsTuY6x1R%2BbKT10tjsFqJvJTqeIaE%3D&reserved=0" originalsrc="https://raw.githubusercontent.com/DiseaseOntology/HumanDiseaseOntology/main/src/ontology/doid.owl" shash="B/0maR3+nAI4E6aG9+qbY0kQRWm3uw15O46+xjVheqFOI1sBeoTEqi68zzU4cHvzRsFDHDZQoONsooZ7SgEKcy1Ij7JSfzSzLL3XHzvXjmG1JIUHqqpDX7AQM9he9EEp+m+yC61oItOGz7LDWCajkv9YOlvpbnc0L3QRi2ETNfE=" originalsrc="https://raw.githubusercontent.com/DiseaseOntology/HumanDiseaseOntology/main/src/ontology/doid.owl" shash="rFqYhnqihZuzIz9s7apDMUtfdbPZiIG+k9PGVUPyol26UBqF2tJWujt6bI/Tg0kO6lAXmP0DSPs14m/Bbkg0ZxvBL3nj1PHBMK31FZtQ6uNQToedvhcxpHUGS8OpjxE2T1Uicv3hzUdGa9cq3xFT9uxbP+bY9Ef866TpjLNRCcM=" class="">https://raw.githubusercontent.com/DiseaseOntology/HumanDiseaseOntology/main/src/ontology/doid.owl</a></div>
<div class="">- <span class="" style="orphans:2; white-space:pre-wrap; widows:2"><a href="https://nam11.safelinks.protection.outlook.com/?url=http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2Fdoid.owl&data=04%7C01%7Clschriml%40som.umaryland.edu%7C7cac52cb769f4897423008d88acccd57%7C717009a620de461a88940312a395cac9%7C0%7C1%7C637411960116539397%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C2000&sdata=oA4z%2BfZBqy1BhIGOZBX3OSGA1IMmSJAukIO%2FPSgMo4o%3D&reserved=0" originalsrc="http://purl.obolibrary.org/obo/doid.owl" shash="xzSXk1wGNXcVyKYIUVd9wcgsBUdoBMaHMo5no6BwSd85slQ+jmdxWnLUCn4R8T+WYui1+LeEhPbpV6JTvbD20GajtNuTZKkTCuLtNsNupwhYmyRu0qTG7ypANEMM1ZYE80tvyYzg4ZQ/sKKAwrjpdDB9CqqCyF+Gy29CR5cgimE=" originalsrc="http://purl.obolibrary.org/obo/doid.owl" shash="cCahhFUtzD85EEdyS+CMX2JqMXccKP6INcyXNtpSOfnk+heigS4pG7mCc4tKNOtQ73rVaGIgFZifiE4BILUzKum0TJeneZdjf4Wkjx72C3ECx3PRezaHvn22B3UzuBE0swDINhxjhyyYT9iClE2PMCnY/t8yMXiKaJReTJrK2Vc=" class="">http://purl.obolibrary.org/obo/doid.owl</a></span>
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<div class="">It appears we may have been configured to use the first one, but with 'master' in the IRI instead of 'main'.</div>
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<div class="">I'm also taking the liberty of updating the Homepage and Documentation metadata.</div>
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<div class="">John</div>
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<div class="">On Nov 13, 2020, at 3:22 PM,<span class="x_Apple-converted-space"> </span><a href="mailto:support@bioontology.org" class="">support@bioontology.org</a><span class="x_Apple-converted-space"> </span>wrote:</div>
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<div class="" style="margin-top:0px; margin-bottom:0px">Name: Lynn Schriml<span class="x_Apple-converted-space"> </span></div>
<div class="" style="margin-top:0px; margin-bottom:0px"><a href="mailto:lschriml@som.umaryland.edu" class="">Email: lschriml@som.umaryland.edu</a></div>
<div class="" style="margin-top:0px; margin-bottom:0px">Location: http%3A%2F%<a href="https://nam11.safelinks.protection.outlook.com/?url=http%3A%2F%2F2fbioportal.bioontology.org%2F&data=04%7C01%7Clschriml%40som.umaryland.edu%7C7cac52cb769f4897423008d88acccd57%7C717009a620de461a88940312a395cac9%7C0%7C1%7C637411960116539397%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C2000&sdata=OFkIVAKUkWKf4wBVTJSS%2BUajfWPQy0LBH6gyBawESLs%3D&reserved=0" originalsrc="http://2fbioportal.bioontology.org/" shash="hJf1h0GTvxfXmQ/Y/r2LfizH+FKEbfq4sfW4NJU6kDNFZroQaZZtJiC9GMWCYyLSP9OaOLN/umwhKsjRW+YeUW4Wlot6m+qpiwLZASVWjdHbDoI7WyElFiNv94vHIjixEqb3NnNEueCFaKnTjDtzVBseceoGMlfAGGWeV8+US7A=" originalsrc="http://2fbioportal.bioontology.org/" shash="bVqehybIVw5QW4v+juVvjNipljDAQl8z2qdus5Vp3vBcPMn1KgBiL/3sYsPJ1OEvUdS7YxwJeQc9h1+Ed1h+83B5jTRwxkWJdxpcy0ZlJxGrVa9iT3vDAlDN4J79A2MNOALgxujMNRy2xqOeSYGd7tODbTfo4LM9fSzmv67gHOk=" class="">2Fbioportal.bioontology.org</a>%2Fontologies%2FDOID</div>
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<strong class="">Feedback:</strong></div>
<div class="" style="margin-top:0px; margin-bottom:0px">Hello, I noticed that the Human Disease Ontology has not been updated in the Bioportal since 2018. We update the DOs GitHub releases at least once a month.<span class="x_Apple-converted-space"> </span><br class="">
Is there a problem with the ontology file ?<span class="x_Apple-converted-space"> </span><br class="">
Thank you,<span class="x_Apple-converted-space"> </span><br class="">
Lynn Schriml<span class="x_Apple-converted-space"> </span><br class="">
<a href="mailto:lschriml@som.umaryland.edu" class="">lschriml@som.umaryland.edu</a><span class="x_Apple-converted-space"> </span><br class="">
PI Human Disease Ontology</div>
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_______________________________________________<br class="">
bioontology-support mailing list<br class="">
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<div class="">John Graybeal</div>
<div class="">Technical Program Manager</div>
<div class="">Center for Expanded Data Annotation and Retrieval /+/ NCBO BioPortal</div>
<div class="">Stanford Center for Biomedical Informatics Research<br class="">
650-736-1632  | ORCID  0000-0001-6875-5360</div>
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<div class="">John Graybeal</div>
<div class="">Technical Program Manager</div>
<div class="">Center for Expanded Data Annotation and Retrieval /+/ NCBO BioPortal</div>
<div class="">Stanford Center for Biomedical Informatics Research<br class="">
650-736-1632  | ORCID  0000-0001-6875-5360</div>
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