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neural crest cell maturation vs. specific cell type differentiation

Doug howe dhowe at cs.uoregon.edu
Thu Mar 16 13:01:12 PST 2006


Good by me...

David Hill wrote:
> The maturation term was instantiated for cases where looking at a cell 
> morphologically it doesn't look like it is doing anything, but it is 
> in fact synthesizing gene products to make it totally functional. One 
> example of this (sorry it is not neural crest) is the epithelial cells 
> of the intestinal crypts. They are born at the bottom of the crypts as 
> columnar epithelial cells, the process making them conform to this 
> shape would be their morphogenesis. As they mature, they don't change 
> shape, but they move up along the villus due to the death of the cells 
> at the tip and the birth of new cells at the bottom. While they are 
> moving up, they are synthesizing the gene products that make them 
> functional absorbative cells. This would be part of their maturation. 
> Eventually they apoptose. This would also be part of their maturation. 
> The idea was to capture the processes that were involved in a cell 
> becoming "an adult" that weren't directly related to the changes in 
> shape of the cell. Another example would be a neuron that has fully 
> extended its axons and dendrites and then receives signals about what 
> kind of receptors and neurotransmitters it is going to make. This 
> would be maturation because it doesn't have anything to do with 
> creating the shape of the cell.
>
> Does this make sense?
>
> David
>
>
> Doug howe wrote:
>
>> Well stated David!
>>
>> The thing that I'm still not clear on then is what the "X cell 
>> maturation" terms are representing.
>> X cell maturation would be defined as :
>> The process leading to the attainment of the full functional capacity 
>> of an X cell. This process is independent of morphogenetic change.
>>
>> While X cell development would be defined as:
>> The process aimed at the progression of a y cell over time, from 
>> initial commitment of the cell to a specific fate, to the fully 
>> functional differentiated cell.
>>
>> Can you clarify the distinction...maybe using neural crest cells as 
>> an example?  (sounds like a thesis defense question!)
>>
>> -Doug
>>
>>
>> David Hill wrote:
>>
>>> In general derivatives are considered as separate cell types. So, 
>>> when a neural crest cell migrates to where it is going and it is 
>>> receiving signals about what it is going to become, it is being 
>>> committed to become another cell type. This process, as GO defines 
>>> it, is part of the differentiation of that other cell type, not part 
>>> of the maturation of the neural crest cell. Although the line 
>>> between when one cell begins and another ends is fuzzy, if we start 
>>> to try to represent cell lineages in the process ontology, we run 
>>> into huge issues. The most obvious ones are things like "Is the 
>>> differentiation of a pigment cell part of the development of a 
>>> neural crest cell because it happens to the neural crest cell,  or 
>>> is the development of a neural crest cell part of the 
>>> differentiation of a pigment cell because it needs to happen for the 
>>> pigment cell to differentiate. For this reason, we keep the lineage 
>>> relationships out of the ontology. The lineage relationships are 
>>> captured in the cell type ontology. At some point, we can use the 
>>> two ontologies to derive both the processes and the lineages. So, 
>>> for example, if a pigement cell develops only from a neural crest 
>>> cell in the cell ontology, then we can define the process of pigment 
>>> cell fate commitment as the process by which a neural crest cell 
>>> becomes committed to form a pigment cell.
>>>
>>> David
>>>
>>>
>>>
>>>
>>>
>>>
>>> Melissa Haendel wrote:
>>>
>>>> Hi, I wanted to send this set of questions separately than my 
>>>> previous email as I think they will require discussion.
>>>>
>>>> I need a term that represents the final stages of neural crest cell 
>>>> differentiation into their derivatives.  I could annotate to 
>>>> pigment cell differentiation, etc, but it would be better to say 
>>>> that all derivatives don't begin their differentiation.  Once 
>>>> neural crest cells begin to differentiate into their derivatives, 
>>>> they are no longer called neural crest cells.  So, would the term 
>>>> "neural crest cell maturation' with the following definition work?  
>>>> "The process leading to the attainment of the full functional 
>>>> capacity of a neural crest cell derivative. This process is 
>>>> independent of morphogenetic change."  I have added the word 
>>>> derivative, but I don't know if this will fly.  Thought I would 
>>>> email the listserve for advice before making a request.
>>>>
>>>> How have any of you dealt with differentiation into derivative cell 
>>>> types with different names in the past?
>>>> Any advice is much appreciated.
>>>>
>>>> Thanks, Melissa Haendel
>>>
>>>
>>>
>>>
>
>



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