Search Mailing List Archives
ihh at fruitfly.org
Tue May 9 00:09:08 PDT 2000
Hi... I've just subscribed to this list.
First off let me say how much I've enjoyed my brief contact with the GO
project so far, gush gush gush etc.
In writing a parser for the *.ontology text files, I encountered a couple
of oddities in function.ontology which look like fairly straightforward
glitches. Can someone please confirm this?
Currently the parser aborts when it hits these lines. Perhaps it should be
The three putative broken lines (all in function.ontology)
> laccase ; GO:0008471 ; EC:188.8.131.52
[indentation appears to be wrong; no type character in front of "laccase"]
> %thromboxane-A synthase ; GO:0004796 ; EC:184.108.40.206
[clashes with term GO:0008400. this term is not referenced anywhere else.
maybe an obsoleted term?]
> thyrotropin-releasing hormone receptor ; GO:0004997
[no type character in front of "thyrotropin..."]
Also, I don't know how to interpret the "(fly, mouse)" qualifiers that
appear in process.ontology. Currently the parser ignores these.
This message is from the GOFriends Mailing list. A list of public
announcements and discussion of the Gene Ontology (GO) project.
Problems with the list? E-mail: owner-gofriends at genome.stanford.edu
Subscribing send "subscribe" to gofriends-request at genome.stanford.edu
Unsubscribing send "unsubscribe" to gofriends-request at genome.stanford.edu
More information about the go-friends