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Mapping Rat gene entries to GO

Valerie Wood val at sanger.ac.uk
Wed Jul 4 06:53:47 PDT 2001


Hi Simon,

I have a load of keyword mappings which I will make available shortly,
you may find them useful.
There are 6036 keywords covering 198 biological process terms

eg
Electron Transport GO:0006118

CYTOCHROME B5
CYTOCHROME BC1 COMPLEX
CYTOCHROME C
CYTOCHROME C OXIDASE ASSEMBLY
CYTOCHROME C REDUCTASE ASSEMBLY
CYTOCHROME C REDUCTASE COMPLEX SUBUNIT
ELECTRON TRANSFER
ELECTRON TRANSPORT
F1 ATPASE ASSEMBLY....
etc

And 732 keywords for 93 component terms

eg
GO:0005657 Replication Fork 

ALPHA DNA POLYMERASE
ARS BINDING
DELTA DNA POLYMERASE
DNA POLYMERASE ALPHA
DNA POLYMERASE DELTA
DNA PRIMASE
DNA REPLICATION FACTOR A
DNA REPLICATION FACTOR C
DNA2\W
EPSILON DNA POLYMERASE
INITIATION OF DNA REPLICATION
INITIATION OF REPLICATION
MCM COMPLEX
OKAZAKI
\WORC\W
ORIGIN RECOGNITION COMPLEX
PCNA
REPLICATION FACTOR A
REPLICATION FACTOR C
REPLICATION FACTOR SUBUNIT
SPAC6B12\.11
REPLICATION FACTOR\-A
REPLICATION FORK
REPLICATION PROTEIN A
REQUIRED FOR DNA REPLICATION
SPAC23C4\.18
SPAC57A10\.13C


There are some S. pombe gene names hardwired, I am gradually removing
these as they are obviously not cross-species

I used the keywords to assign terms to S. cerevisiae using the SGD
datset form November.
The results are at

Process
http://www.sanger.ac.uk/Projects/S_cerevisiae/FUNCAT/funcat.shtml

Component
http://www.sanger.ac.uk/Projects/S_cerevisiae/FUNCAT_COMP/funcat_comp.shtml


I am gradually adding more terms to deal with the unsorted entries.
I will make them available in a month or so when I have tidied them up.

-- 









----------------------------------------------------------------------------------
Valerie Wood		       Tel: 01223 494954
S. Pombe Genome Project	       Fax: 01223 494919 		       
The Sanger Centre              email: val at sanger.ac.uk
Wellcome Trust Genome Campus   http://www.sanger.ac.uk/Projects/S_pombe 
Cambridge                      
CB10 1SA


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