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Updates

Michael Ashburner (Genetics) ma11 at gen.cam.ac.uk
Tue Sep 18 08:04:23 PDT 2001


** September 18 2001: Additions to GO ontologies.
   ==============================================

   1. With the great help of Dr. Paul Kellam (London) and Dr. Bill Gillis
   (Delaware) the three GO ontologies have been updated so as to be of use for
   the annotation of viral gene products.

   2. The biological_process and molecular_function ontologies have been
   updated to include information from The University of Minnesota 
   Biocatalysis/Biodegradation Database [http://umbbd.ahc.umn.edu/index.html].
   Functions (enzymes) present in both GO and in the UM-BBD have been given a
   database cross-reference of the form UM-BBD_enzymeID:eX (where X is
   an integer); pathways (in biological_process) have been given a database
   cross-reference of the form UM-BBD_pathwayID:X, where X is a string.
   
   Many thanks to Dr. Lynda Ellis for her help.

   The url syntax for hyperlinking to UM-BDD for enzymes is:
http://umbbd.ahc.umn.edu/servlets/pageservlet?ptype=ep&enzymeID=eX

   The url syntax for hyperlinking to UM-BDD for pathways is:
http://umbbd.ahc.umn.edu/phe/X_map.html
   
   replacing 'X' by the integer or string as appropriate.

[ma]

!


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