Search Mailing List Archives


Limit search to: Subject & Body Subject Author
Sort by: Reverse Sort
Limit to: All This Week Last Week This Month Last Month
Select Date Range     through    

Pictorial representation of Gene Ontologies

David Hill dph at informatics.jax.org
Fri Jun 7 11:27:45 PDT 2002


Yes, currently the ontologies have over 11000 nodes and over14000 
relationships.



At 02:15 PM 6/7/2002 -0400, Yockey, Courtland wrote:
>Thierry,
>
>I agree with Chris about the size of a pictorial representation of the
>entire 3 Ontologies together.  I would recommend something more along the
>lines of showing a GO SLIM tree or a tree that has been sliced at a
>particular level, maybe the 2nd level below the main Ontology branch points.
>Is what you are trying to portray in the figure the overall structure of the
>GO?  Perhaps you could clarify this.
>
>Courtland
>
>===================
>Courtland E. Yockey
>AstraZeneca Pharmaceuticals LP
>Informatics Scientist
>Enabling Science & Technology - Informatics
>1800 Concord Pike, FRC CRDL202
>Wilmington, DE  19850
>phone = 302-886-5151
>fax = 302-886-4803
>e-mail = courtland.yockey at astrazeneca.com
>
>
>
>-----Original Message-----
>From: Chris Mungall [mailto:cjm at fruitfly.org]
>Sent: Friday, June 07, 2002 2:05 PM
>To: Thierry Lombardot
>Cc: go-friends at genome.Stanford.EDU
>Subject: Re: GOFriends e-mail archive
>
>
>
>This is possible in AmiGO for small subsets of GO, but the pictorial graph
>representations rapidly get enormous as you add more GO terms.
>
>You can also get pie chart representations in AmiGO, but again this
>doesn't scale to the whole ontology.
>
>Really the only way to do this is with the standard tree view, but this
>has some limitations in terms of representing multiple parentage in an
>intuitive way
>
>On Fri, 7 Jun 2002, Thierry Lombardot wrote:
>
> > Dear GO-friends,
> > I'm looking for a large picture representing all (or most) GO terms and
> > their relationships, in the form of a printable tree/map for example.
> > Did someone create such a representation of GO with the current status
> > already?
> >
> > Thank you in advance,
> >
> > Thierry Lombardot
> > MPI-Bremen,
> > Germany.
> >
> >
> > --
> > This message is from the GOFriends moderated mailing list.  A list of
>public
> > announcements and discussion of the Gene Ontology (GO) project.
> > Problems with the list?           E-mail: owner-gofriends at geneontology.org
> > Subscribing   send   "subscribe"   to   gofriends-request at geneontology.org
> > Unsubscribing send   "unsubscribe"  to  gofriends-request at geneontology.org
> > Web:          http://www.geneontology.org/
> >
>
>
>--
>This message is from the GOFriends moderated mailing list.  A list of public
>announcements and discussion of the Gene Ontology (GO) project.
>Problems with the list?           E-mail: owner-gofriends at geneontology.org
>Subscribing   send   "subscribe"   to   gofriends-request at geneontology.org
>Unsubscribing send   "unsubscribe"  to  gofriends-request at geneontology.org
>Web:          http://www.geneontology.org/
>
>--
>This message is from the GOFriends moderated mailing list.  A list of public
>announcements and discussion of the Gene Ontology (GO) project.
>Problems with the list?           E-mail: owner-gofriends at geneontology.org
>Subscribing   send   "subscribe"   to   gofriends-request at geneontology.org
>Unsubscribing send   "unsubscribe"  to  gofriends-request at geneontology.org
>Web:          http://www.geneontology.org/


--
This message is from the GOFriends moderated mailing list.  A list of public
announcements and discussion of the Gene Ontology (GO) project.
Problems with the list?           E-mail: owner-gofriends at geneontology.org
Subscribing   send   "subscribe"   to   gofriends-request at geneontology.org
Unsubscribing send   "unsubscribe"  to  gofriends-request at geneontology.org
Web:          http://www.geneontology.org/



More information about the go-friends mailing list