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Problems with gene association files

Harold Drabkin hjd at
Fri Jun 28 12:03:41 PDT 2002

You may need to update your file sources. There are currently NO annotations
to obsoleted terms in the MGI file. When a term is obsoleted, then are
removed on the next submission (done weekly). There hasn¹t been for several
weeks.  When there are a lot of terms obsoleted (like removal of the antigen
terms), this becomes arduous.  Each annotation is looked at to see if it can
be replaced with a newer/better/more appropriate one, so it can the whole
week to clear them.

If there is nothing known about a function, process, or component, then it
is important to say so; it means that someone looked; when there is
something, then the ³unknown² is replaced. If there is no annotation then
for us at least, it means someone hasn¹t looked yet.

> gene_associations.mgi:
> 24 "descendant-of-obsolete" attribs (429 associations)
> 3 "descendant-of-unknown" attribs (839 associations)
> Incorrect in certainly the past few weeks submissions.

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