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One question (fwd)

Peifen Zhang peifenz at acoma.stanford.edu
Thu May 16 12:50:50 PDT 2002


Hi there,

I am not sure about Kegg. But there is another metabolic pathway database
that can display quantitative gene expression data on schematics of
metabolic pathways. The web site is: http://biocyc.org. The site currently
has about a dozen species(mostly microbial)-specific pathway databases.
Detailed info as how to display expression data on pathways can be found on
the web site, page:  http://ecocyc.org:1555/expression.html.

In addition, The Arabidopsis Information Resources has adopted the biocyc
product and have been developing a Arabidopsis metabolic pathway
database. It can be found at http://aracyc.stanford.edu. The
Arabidopsis metabolic pathway also has the function of displaying expression
data from Arabidopsis studies.

Peifen


> ---------- Forwarded message ----------
> Date: Thu, 16 May 2002 10:51:52 -0500
> From: WATSON_DAVID_E at lilly.com
> To: Michael Ashburner <ma11 at gen.cam.ac.uk>, go-friends at genome.stanford.edu,
>      owner-gofriends at genome.stanford.edu, pshannon at systemsbiology.org
> Subject: One question
>
> Does anyone know of software that can incorporate quantitative data on
> transcript or protein levels into a schematic of biochemical pathways.
> Example: Affy data into Kegg pathways.
>
> If the answer is no, does anyone have suggestions on how to do this?
>
> Thanks.
>

-------------------------------------------------------------------------------
Peifen Zhang
The Arabidopsis Information Resource
Carnegie Institute of Washington
Department of Plant Biology
260 Panama Street
Stanford, CA 94305

peifenz at acoma.stanford.edu
Tel: 650-325-1521  x358
-------------------------------------------------------------------------------

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