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** December 17 2003: GOA releases.**

Daniel Barrell dbarrell at ebi.ac.uk
Wed Dec 17 06:08:52 PST 2003


** December 17 2003: GOA releases.**
====================================

GOA (GO Annotation at EBI) is a project run by the European
Bioinformatics Institute that aims to provide assignments of gene
products to the Gene Ontology (GO) resource. The project announces
the 14th release of all GO annotations that exist in UniProt
(GOA-UniProt) as well as an 16th release of annotation for the
SWISS-PROT/TrEMBL/Ensembl non-redundant human proteome set (GOA-Human)
and 2nd release of GOA mouse and rat and a 5th release of out PDB data set.

** NEW **

IEA annotation of microbial proteomes has been enhanced by applying a 
new hamap2go mapping to all UniProt records with a HAMAP cross 
reference.  This is a joint collaboration between Karine Michoud at SIB 
and the GOA team at the EBI.  The file is available here:

ftp://ftp.ebi.ac.uk/pub/databases/GO/goa/external2go/hamap2go

Please see the readme's on the FTP site for more details.

** NEW **

December 15th saw the first release of UniProt, the re-incarnation of
Swiss-Prot, TrEMBL and PIR databases.  To reflect this change,
references to 'SPTR' have been changed to 'UniProt' and the new GOA SPTR
file is now located at:

ftp://ftp.ebi.ac.uk/pub/databases/GO/goa/UNIPROT/gene_association.goa_uniprot.gz

Please update any references you may have.  The old file will continue
to be updated until early next year.

We have also incorporated manual annotations from MGI, SGD, and FlyBase.
Acknowledgement of this is contained in column 15, 'Assigned_By'.  See
http://www.geneontology.org/doc/GO.annotation.html#file for more details.

The data can be obtained via:

          EBI FTP: ftp://ftp.ebi.ac.uk/pub/databases/GO/goa/

          EBI SRS: http://srs.ebi.ac.uk. Search GOA data library
(updated tonight)

          GO FTP: ftp://ftp.geneontology.org/pub/go/gene-associations/

For further information read: http://www.ebi.ac.uk/GOA
or contact goa at ebi.ac.uk.

Seasons Greetings!

Kind regards

Evelyn Camon & Daniel Barrell
(SWISS-PROT GOA Project)










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