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Gene identifier synonym table standard and/or repository?
hester at galton.ucl.ac.uk
Thu Feb 13 09:42:37 PST 2003
For human genes there is a list of approved symbols along with aliases and
previous symbols (all synonyms) available at URL:
HGNC ID Status Approved Gene Symbol Approved Gene Name Previous
symbol Enzyme ID Location Aliases MGI
PMID1 PMID2 Sequence Accession ID Previous Gene Name GDB
ID LocusLink ID OMIM Ref_Seq Swiss-Prot ID
At 10:54 13/02/2003 -0500, Fritz Roth wrote:
>We are working on some new software that uses GO annotation, and we would
>really like it to support all GO-annotated organisms. Our chief barrier
>to doing this is the lack of gene identifier synonym tables for each
>organism (so that users can enter gene names rather than being restricted
>to MOD IDS, e.g., SGD or MGI IDs).
>Is there an agreed GO Consortium standard for gene identifier synonym
>tables (could be as simple as tab-delimited text with a synonym-uniqueID
>pair on each line). If so, is there a repository for such files? Or is
>this a GMOD question?
>Frederick P. Roth, Asst. Professor
>Harvard Medical School
>Dept. of Biological Chemistry and Molecular Pharmacology
>250 Longwood Avenue, SGMB-322, Boston, MA 02115
>(617) 432-3551 phone (617) 432-3557 FAX
>froth at hms.harvard.edu http://llama.med.harvard.edu
>This message is from the GOFriends moderated mailing list. A list of public
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Hester Mary Wain PhD
Nomenclature Project Manager and Editor
HUGO Gene Nomenclature Committee
The Galton Laboratory
University College London, UK
Email:nome at galton.ucl.ac.uk
The work of the HGNC is supported by NIH contract N01-LM-9-3533 (60%)
and by the UK Medical Research Council (40%).
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