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Gene identifier synonym table standard and/or repository?
Hester Wain
hester at galton.ucl.ac.uk
Thu Feb 13 09:42:37 PST 2003
Hello Fritz,
For human genes there is a list of approved symbols along with aliases and
previous symbols (all synonyms) available at URL:
http://www.gene.ucl.ac.uk/public-files/nomen/searchdata.txt
HGNC ID Status Approved Gene Symbol Approved Gene Name Previous
symbol Enzyme ID Location Aliases MGI
PMID1 PMID2 Sequence Accession ID Previous Gene Name GDB
ID LocusLink ID OMIM Ref_Seq Swiss-Prot ID
Hester
At 10:54 13/02/2003 -0500, Fritz Roth wrote:
>Greetings GOphiles,
>
>We are working on some new software that uses GO annotation, and we would
>really like it to support all GO-annotated organisms. Our chief barrier
>to doing this is the lack of gene identifier synonym tables for each
>organism (so that users can enter gene names rather than being restricted
>to MOD IDS, e.g., SGD or MGI IDs).
>
>Is there an agreed GO Consortium standard for gene identifier synonym
>tables (could be as simple as tab-delimited text with a synonym-uniqueID
>pair on each line). If so, is there a repository for such files? Or is
>this a GMOD question?
>
>Thanks!
>Fritz Roth
>
>-------------------------------------------------
>Frederick P. Roth, Asst. Professor
>Harvard Medical School
>Dept. of Biological Chemistry and Molecular Pharmacology
>250 Longwood Avenue, SGMB-322, Boston, MA 02115
>(617) 432-3551 phone (617) 432-3557 FAX
>froth at hms.harvard.edu http://llama.med.harvard.edu
>-------------------------------------------------
>
>
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~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Hester Mary Wain PhD
Nomenclature Project Manager and Editor
HUGO Gene Nomenclature Committee
The Galton Laboratory
University College London, UK
Email:nome at galton.ucl.ac.uk
Tel:44-20-7679-5027
Fax:44-20-7387-3496
URL: http://www.gene.ucl.ac.uk/nomenclature/
The work of the HGNC is supported by NIH contract N01-LM-9-3533 (60%)
and by the UK Medical Research Council (40%).
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