Search Mailing List Archives
Question about buliding GO/go_200305-utilities-src/c-lib
Chris Mungall
cjm at fruitfly.org
Tue Jun 3 18:48:20 PDT 2003
Hi Dapeng
The C lib is experimental and not supported. You should use the perl
library.
Cheers
Chris
On Tue, 3 Jun 2003 Dapeng.Xu at aventis.com wrote:
> Dear all,
>
> GO/go_200305-utilities-src/c-lib is part of GO. When I was trying to build
> this, I met some problem. I met more problem when I tried to fix the problem.
>
> The following is part the error message
>
> *****************************************************************************
> *****************************************************************************
> ****
> > make libGO.so
> make: *** Warning: File `Makefile' has modification time in the future
> (2003-06-03 11:58:17.600001 > 2003-06-03 11:57:39.119953094)
> gcc -I/usr/local/include/glib-2.0 -I/usr/local/lib/glib-2.0/include/
> -I/usr/local/include -shared -o libGO.so golib.c -L/usr/local/lib/
> -lglib-2.0
> Text relocation remains referenced
> against symbol offset in file
> <unknown> 0x149c /var/tmp/ccv38sVN.o
> <unknown> 0x14a0 /var/tmp/ccv38sVN.o
> <unknown> 0x158c /var/tmp/ccv38sVN.o
> <unknown> 0x1590 /var/tmp/ccv38sVN.o
> <unknown> 0x40 /var/tmp/ccv38sVN.o
> <unknown> 0x44 /var/tmp/ccv38sVN.o
> <unknown> 0x200 /var/tmp/ccv38sVN.o
> <unknown> 0x204 /var/tmp/ccv38sVN.o
> <unknown> 0x234 /var/tmp/ccv38sVN.o
> <unknown> 0x238 /var/tmp/ccv38sVN.o
> <unknown> 0x3d0 /var/tmp/ccv38sVN.o
> fprintf 0x4c /var/tmp/ccv38sVN.o
> fprintf 0x20c /var/tmp/ccv38sVN.o
> fprintf 0x240 /var/tmp/ccv38sVN.o
> fprintf 0x22e8 /var/tmp/ccv38sVN.o
> fprintf 0x2430 /var/tmp/ccv38sVN.o
> fprintf 0x2504 /var/tmp/ccv38sVN.o
> fprintf 0x28e4 /var/tmp/ccv38sVN.o
> ...
>
> ld: fatal: relocations remain against allocatable but non-writable sections
> collect2: ld returned 1 exit status
> make: *** [libGO.so] Error 1
> *****************************************************************************
> *****************************************************************************
> ****
>
> It seems like the standard C library can not be found. However, the C library
> is there when I run other compilations. Later, we discovered that the -shared
> option has something to do with the error. So we ger rid of it and get the
> following error message:
>
> *****************************************************************************
> *****************************************************************************
> ****
> > gcc -I/usr/local/include/glib-2.0 -I/usr/local/lib/glib-2.0/include/
> -I/usr/local/include -o libGO.so golib.c -L/usr/local/lib/ -lglib-2.0
> Undefined first referenced
> symbol in file
> pow /var/tmp/ccvS3e1U.o
> main
> /usr/local/lib/gcc-lib/sparc-sun-solaris2.8/3.0.4/crt1.o
> ld: fatal: Symbol referencing errors. No output written to libGO.so
> collect2: ld returned 1 exit status
> *****************************************************************************
> *****************************************************************************
> ****
>
> Also, the Makefile in c-lib directory seems outdated.
>
> Can someone help me?
>
>
> thanks,
>
> Dapeng
>
>
>
>
> --
> This message is from the GOFriends moderated mailing list. A list of public
> announcements and discussion of the Gene Ontology (GO) project.
> Problems with the list? E-mail: owner-gofriends at geneontology.org
> Subscribing send "subscribe" to gofriends-request at geneontology.org
> Unsubscribing send "unsubscribe" to gofriends-request at geneontology.org
> Web: http://www.geneontology.org/
>
--
This message is from the GOFriends moderated mailing list. A list of public
announcements and discussion of the Gene Ontology (GO) project.
Problems with the list? E-mail: owner-gofriends at geneontology.org
Subscribing send "subscribe" to gofriends-request at geneontology.org
Unsubscribing send "unsubscribe" to gofriends-request at geneontology.org
Web: http://www.geneontology.org/
More information about the go-friends
mailing list