Question about buliding GO/go_200305-utilities-src/c-lib

[Arne.Muller at aventis.com]

You need to link the libm (-lm) where the "pow" function is defined (at least
your static version of the libGO should then work.

	Arne


> -----Original Message-----
> From: Xu, Dapeng 
> Sent: 03 June 2003 19:18
> To: gofriends at genome.stanford.edu
> Subject: Question about buliding GO/go_200305-utilities-src/c-lib
> 
> 
> Dear all,
> 
> GO/go_200305-utilities-src/c-lib is part of GO. When I was 
> trying to build
> this, I met some problem. I met more problem when I tried to 
> fix the problem.
> 
> The following is part the error message
> 
> **************************************************************
> ***************
> **************************************************************
> ***************
> ****
> > make libGO.so
> make: *** Warning: File `Makefile' has modification time in the future
> (2003-06-03 11:58:17.600001 > 2003-06-03 11:57:39.119953094)
> gcc -I/usr/local/include/glib-2.0  -I/usr/local/lib/glib-2.0/include/
> -I/usr/local/include -shared -o libGO.so golib.c  -L/usr/local/lib/
> -lglib-2.0    
> Text relocation remains                         referenced
>     against symbol                  offset      in file
> <unknown>                           0x149c      /var/tmp/ccv38sVN.o
> <unknown>                           0x14a0      /var/tmp/ccv38sVN.o
> <unknown>                           0x158c      /var/tmp/ccv38sVN.o
> <unknown>                           0x1590      /var/tmp/ccv38sVN.o
> <unknown>                           0x40        /var/tmp/ccv38sVN.o
> <unknown>                           0x44        /var/tmp/ccv38sVN.o
> <unknown>                           0x200       /var/tmp/ccv38sVN.o
> <unknown>                           0x204       /var/tmp/ccv38sVN.o
> <unknown>                           0x234       /var/tmp/ccv38sVN.o
> <unknown>                           0x238       /var/tmp/ccv38sVN.o
> <unknown>                           0x3d0       /var/tmp/ccv38sVN.o
> fprintf                             0x4c        /var/tmp/ccv38sVN.o
> fprintf                             0x20c       /var/tmp/ccv38sVN.o
> fprintf                             0x240       /var/tmp/ccv38sVN.o
> fprintf                             0x22e8      /var/tmp/ccv38sVN.o
> fprintf                             0x2430      /var/tmp/ccv38sVN.o
> fprintf                             0x2504      /var/tmp/ccv38sVN.o
> fprintf                             0x28e4      /var/tmp/ccv38sVN.o
> ...
> 
> ld: fatal: relocations remain against allocatable but 
> non-writable sections
> collect2: ld returned 1 exit status
> make: *** [libGO.so] Error 1
> **************************************************************
> ***************
> **************************************************************
> ***************
> ****
> 
> It seems like the standard C library can not be found. 
> However, the C library
> is there when I run other compilations. Later, we discovered 
> that the -shared
> option has something to do with the error. So we ger rid of 
> it and get the
> following error message:
> 
> **************************************************************
> ***************
> **************************************************************
> ***************
> ****
> > gcc -I/usr/local/include/glib-2.0  
> -I/usr/local/lib/glib-2.0/include/
> -I/usr/local/include -o libGO.so golib.c  -L/usr/local/lib/ -lglib-2.0
> Undefined                       first referenced
>  symbol                             in file
> pow                                 /var/tmp/ccvS3e1U.o
> main
> /usr/local/lib/gcc-lib/sparc-sun-solaris2.8/3.0.4/crt1.o
> ld: fatal: Symbol referencing errors. No output written to libGO.so
> collect2: ld returned 1 exit status
> **************************************************************
> ***************
> **************************************************************
> ***************
> ****
> 
> Also, the Makefile in c-lib directory seems outdated.
> 
> Can someone help me?
> 
> 
> thanks,
> 
> Dapeng
> 
> 
> 
> 
> --
> This message is from the GOFriends moderated mailing list.  A 
> list of public
> announcements and discussion of the Gene Ontology (GO) project.
> Problems with the list?           E-mail: 
> owner-gofriends at geneontology.org
> Subscribing   send   "subscribe"   to   
> gofriends-request at geneontology.org
> Unsubscribing send   "unsubscribe"  to  
> gofriends-request at geneontology.org
> Web:          http://www.geneontology.org/
> 


--
This message is from the GOFriends moderated mailing list.  A list of public
announcements and discussion of the Gene Ontology (GO) project.
Problems with the list?           E-mail: owner-gofriends at geneontology.org
Subscribing   send   "subscribe"   to   gofriends-request at geneontology.org
Unsubscribing send   "unsubscribe"  to  gofriends-request at geneontology.org
Web:          http://www.geneontology.org/