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Cluster by GO

Cheng, Jill Jill_Cheng at affymetrix.com
Fri May 16 10:43:40 PDT 2003


For visual identification of gene clusters, Affymetrix offers a free web
tool for visualizing probe_sets based on GO annotations in the context of GO
graphic structure, go to http://www.affymetrix.com/analysis/index.affx  and
click on "GO analysis" tab, registration is needed but it's totally free.  
This tool is basically a GO-graph browser in the form of a heat map, it
takes a input probe_set list, and Go nodes are colored based on the counts
of hit, percentage of the sub-tree, or user specified parameters.  Thus gene
clusters may be identified visually.  The graph is also interactive,
clicking on a node brings up a tabulated executive summary of annotations
for the genes associated with that branch.
All feedbacks are welcomed!

Jill Cheng, Ph.D.
Staff bioinformatics scientist 
Affymetrix, Inc.

-----Original Message-----
From: Andreas Gisel [mailto:gisel at tiscali.ch] 
Sent: Friday, May 16, 2003 6:28 AM
To: gofriends at genome.Stanford.EDU
Subject: Cluster by GO


I am wondering whether there are further activities in algorithms of 
gene/ptotein clustering by GO beside the existing tools listed in GO Tools 
in the Consortium page.

Thanks

Andreas Gisel



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This message is from the GOFriends moderated mailing list.  A list of public
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