Search Mailing List Archives
Cluster by GO
Cheng, Jill
Jill_Cheng at affymetrix.com
Fri May 16 10:43:40 PDT 2003
For visual identification of gene clusters, Affymetrix offers a free web
tool for visualizing probe_sets based on GO annotations in the context of GO
graphic structure, go to http://www.affymetrix.com/analysis/index.affx and
click on "GO analysis" tab, registration is needed but it's totally free.
This tool is basically a GO-graph browser in the form of a heat map, it
takes a input probe_set list, and Go nodes are colored based on the counts
of hit, percentage of the sub-tree, or user specified parameters. Thus gene
clusters may be identified visually. The graph is also interactive,
clicking on a node brings up a tabulated executive summary of annotations
for the genes associated with that branch.
All feedbacks are welcomed!
Jill Cheng, Ph.D.
Staff bioinformatics scientist
Affymetrix, Inc.
-----Original Message-----
From: Andreas Gisel [mailto:gisel at tiscali.ch]
Sent: Friday, May 16, 2003 6:28 AM
To: gofriends at genome.Stanford.EDU
Subject: Cluster by GO
I am wondering whether there are further activities in algorithms of
gene/ptotein clustering by GO beside the existing tools listed in GO Tools
in the Consortium page.
Thanks
Andreas Gisel
--
This message is from the GOFriends moderated mailing list. A list of public
announcements and discussion of the Gene Ontology (GO) project.
Problems with the list? E-mail: owner-gofriends at geneontology.org
Subscribing send "subscribe" to gofriends-request at geneontology.org
Unsubscribing send "unsubscribe" to gofriends-request at geneontology.org
Web: http://www.geneontology.org/
--
This message is from the GOFriends moderated mailing list. A list of public
announcements and discussion of the Gene Ontology (GO) project.
Problems with the list? E-mail: owner-gofriends at geneontology.org
Subscribing send "subscribe" to gofriends-request at geneontology.org
Unsubscribing send "unsubscribe" to gofriends-request at geneontology.org
Web: http://www.geneontology.org/
More information about the go-friends
mailing list