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Comparing graphs

Stein Aerts stein.aerts at
Fri Oct 3 03:10:37 PDT 2003


Would anyone know of a good method (and preferably easy to implement) 
that compares 2 genes based on their GO annotation by calculating a 
similarity between the two graphs? I would prefer not to transform it 
into a bitvector but use the complete graph (or actually the annotated 
terms) in the comparison.

Thank you in advance and best regards,

Stein Aerts BioI at SISTA
K.U.Leuven ESAT-SCD Belgium

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