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Comparing graphs

Arne.Muller at aventis.com Arne.Muller at aventis.com
Fri Oct 3 04:52:19 PDT 2003


Hi,

have a look at 

Lord PW, Stevens RD, Brass A, Goble CA.
Investigating semantic similarity measures across the Gene Ontology: the
relationship between sequence and annotation.
Bioinformatics. 2003 Jul 1;19(10):1275-83. 
PMID: 12835272 [PubMed - in process] 

They're comparing proteins based on their GO sub-graphs.

	regards,

	Arne

--
Arne Muller, Ph.D.
Aventis Pharma, Drug Safety Evaluation
13 quai Jules Guesde
94403 Vitry-sur-Seine CEDEX, FRANCE
phone: +33-(0)1589-32896
fax  : +33-(0)1589-38197
email: arne.muller at aventis.com


> -----Original Message-----
> From: owner-gofriends at genome.stanford.edu
> [mailto:owner-gofriends at genome.stanford.edu]On Behalf Of Stein Aerts
> Sent: 03 October 2003 12:11
> To: gofriends at genome.stanford.edu
> Subject: Comparing graphs
> 
> 
> Hi,
> 
> Would anyone know of a good method (and preferably easy to implement) 
> that compares 2 genes based on their GO annotation by calculating a 
> similarity between the two graphs? I would prefer not to transform it 
> into a bitvector but use the complete graph (or actually the 
> annotated 
> terms) in the comparison.
> 
> Thank you in advance and best regards,
> Stein
> 
> 
> -- 
> Stein Aerts BioI at SISTA
> K.U.Leuven ESAT-SCD Belgium
> http://www.esat.kuleuven.ac.be/~dna/BioI
> 
> 
> 
> 
> --
> This message is from the GOFriends moderated mailing list.  A 
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