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August 11 2004: GOA release
camon at ebi.ac.uk
Wed Aug 11 08:53:45 PDT 2004
Further to Daniels message there was also integration of manual annotations
from GeneDB (S.pombe). Thanks to Valerie Wood for these.
This release has 1 million more GO annotations than last months.
This is due to updated mappings in InterPro2go and spkw2go (thanks
to Jacob Hurst, Queen Mary University of London)) and also
because UniProt is getting bigger.
Daniel Barrell wrote:
> ** August 11 2004: GOA releases.**
> GOA (GO Annotation at EBI) is a project run by the European
> Bioinformatics Institute that aims to provide assignments of gene
> products to the Gene Ontology (GO) resource. The project announces
> the 20th release of all GO annotations that exist in UniProt
> (GOA-UniProt) as well as an 22nd release of annotation for the
> Swiss-Prot/TrEMBL/Ensembl/RefSeq non-redundant human proteome set
> (GOA-Human) and 8th release of GOA mouse and rat and a 11th release of
> our PDB data set.
> * NEW: This release now includes external manual annotation from the Rat
> Genome Database group (attributed using 'RGD') *
> GOA human, mouse and rat now contain annotations to RefSeq (NP/XP)
> entries. Annotations have been added by InterPro2go mappings. This
> reflects the data sets provided by the International Protein Index
> (IPI). For further details see the README files which accompany each
> Gene Association file. To read more about the IPI sets go here:
> Please note that the species specific xrefs.goa files are now named
> according to species, ie: human.xrefs, mouse.xrefs and rat.xrefs.
> We would like to take this opportunity to thank Dr Ruth Lovering (HGNC)
> for her contribution to GO annotation at the EBI.
> The data can be obtained via:
> EBI FTP: ftp://ftp.ebi.ac.uk/pub/databases/GO/goa/
> EBI SRS: http://srs.ebi.ac.uk. Search GOA data library *
> GO FTP: ftp://ftp.geneontology.org/pub/go/gene-associations/
> GO CVS: http://www.geneontology.org/GO.CVS.help.html *
> For further information read: http://www.ebi.ac.uk/GOA
> or contact goa at ebi.ac.uk.
> Kind regards
> Evelyn Camon & Daniel Barrell
> (UniProt GOA Project)
> * Updated tonight
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