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File format question

Victoria Petri vpetri at mcw.edu
Tue Dec 21 07:13:39 PST 2004


Hello all,
These days the GO text files are generated from the obo file. I was
wondering if anyone knows of a way to go from a text file to the obo file
format.

Thanks,

Victoria

Victoria Petri, Ph.D.
Scientific Curator for Gene Ontology
Rat Genome Database (http://www.rgd.mcw.edu)
Bioinformatics Research Center (http://www.brc.mcw.edu)
Medical College of Wisconsin
8701 Watertown Plank Road
Milwaukee, WI 53208
(414) 456-7507
(414) 456-6190 Fax
vpetri at mcw.edu
vpetri at mail.brc.mcw.edu

-----Original Message-----
From: Jane Lomax [mailto:jane at ebi.ac.uk] 
Sent: Monday, December 20, 2004 10:51 AM
To: gofriends at genome.stanford.edu
Subject: namespace change

Hi - this is just a quick warning that we'll be changing the namespace 
field in the geneontology.obo file tomorrow. There has been some 
discussion about this on the go-database list (see 
http://mail.fruitfly.org/pipermail/go-database/2004-December/thread.html 
thread 'Term type changed?).

The change will be from:

namespace: process
namespace: function
namespace: component

to:

namespace: biological_process
namespace: molecular_function                 
namespace: cellular_component

There will be no change to the old GO flat files (function.ontology, 
process.ontology, component.ontology and GO.defs).

Let me know if anyone has any queries,

Jane Lomax
GO editorial office


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--
This message is from the GOFriends moderated mailing list.  A list of public
announcements and discussion of the Gene Ontology (GO) project.
Problems with the list?           E-mail: owner-gofriends at geneontology.org
Subscribing   send   "subscribe"   to   gofriends-request at geneontology.org
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