Search Mailing List Archives


Limit search to: Subject & Body Subject Author
Sort by: Reverse Sort
Limit to: All This Week Last Week This Month Last Month
Select Date Range     through    

GO Xref Abbs now served by MOBY

Michael Ashburner (Genetics) ma11 at gen.cam.ac.uk
Wed Feb 25 05:38:40 PST 2004


Mark

Looks good and close, but not quite a cigar (you know, I never knew what that
meant !).

It seems as if 'note' and 'example' are transposed:


abbreviation: FB
database:  FlyBase.
object: Gene identifier.
example_id: [NCBI use FLYBASE]
generic_url: http://flybase.bio.indiana.edu/
note: FB:FBgn0000024
url_syntax: http://fly.ebi.ac.uk:7081/.bin/fbidq.html?
url_syntax: http://flybase.bio.indiana.edu/.bin/fbidq.html?
url_example: http://fly.ebi.ac.uk:7081/.bin/fbidq.html?FBgn0000055

should be:

abbreviation: FB
database:  FlyBase.
object: Gene identifier.
note: [NCBI use FLYBASE]
generic_url: http://flybase.bio.indiana.edu/
example_id: FB:FBgn0000024
url_syntax: http://fly.ebi.ac.uk:7081/.bin/fbidq.html?
url_syntax: http://flybase.bio.indiana.edu/.bin/fbidq.html?
url_example: http://fly.ebi.ac.uk:7081/.bin/fbidq.html?FBgn0000055


and

abbreviation: ENSEMBL
database:  Database of automatically annotated genomic data.
object: Identifier.
generic_url: http://www.ensembl.org/
note: ENSEMBL:ENSP00000265949
url_syntax: http://www.ensembl.org/perl/protview?peptide=
url_example: http://www.ensembl.org/perl/protview?peptide=ENSP00000265949

should be

abbreviation: ENSEMBL
database:  Database of automatically annotated genomic data.
object: Identifier.
generic_url: http://www.ensembl.org/
example_id: ENSEMBL:ENSP00000265949
url_syntax: http://www.ensembl.org/perl/protview?peptide=
url_example: http://www.ensembl.org/perl/protview?peptide=ENSP00000265949


and in this

abbreviation: GOC:unpublished
database:  Temporary reference for unpublished papers.
object: Doesn't link anywhere yet.

should not 'Doesn't link anywhere yet' not be a 'note:' ?

and in these (and there are others):

abbreviation: NCBI_AccVer
database:  An identifier representing an NCBI (GenBank) Accession number, 
including the version suffix (e.g. J00522.1)


abbreviation: ATH_Insert_number
database:  Unique number given to all Arabidopsis inserts (e.g. salk:000001)
why is the e.g. not a 'example_id:' ?

Others (?Jane) may have other comments.

Best - Michael


--
This message is from the GOFriends moderated mailing list.  A list of public
announcements and discussion of the Gene Ontology (GO) project.
Problems with the list?           E-mail: owner-gofriends at geneontology.org
Subscribing   send   "subscribe"   to   gofriends-request at geneontology.org
Unsubscribing send   "unsubscribe"  to  gofriends-request at geneontology.org
Web:          http://www.geneontology.org/



More information about the go-friends mailing list