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[GO] Re: [MOBY] Re: GO Xref Abbs now served by MOBY

Michael Ashburner (Genetics) ma11 at gen.cam.ac.uk
Thu Feb 26 08:57:05 PST 2004


Looks OK but still not see why you have this (as an example of several)

abbreviation: PompepG
database:  Gene from Schizzosaccharomyces pompbe genes. (e.g. PompepG:YTM1)


rather than this:

abbreviation: PompepG
database:  Gene from Schizzosaccharomyces pompbe genes.
example: PompepG:YTM1


abbreviation: HUGO
object: Prefix.



A number of others have much missing data .. are those to be completed
by you (i.e. Mark W) ?


This looks wrong:
abbreviation: REMTREMBL
database:  Computer-annotated protein sequence database containing the
object: Identifier.
example: REMTREMBL:CAC01666

should be

abbreviation: REMTREMBL
database: Computer-annotated protein sequence database containing the
translations of those codings sequences (CDS) present in the EMBL
Nucleotide Sequence Database that will not be included in
SWISS-PROT. These include: immunoglobulins and T-cell receptors,
synthetic sequences, patent application sequences, small fragments,
CDS not coding for real proteins and truncated proteins.


Would be nice if Mark's output could preserve the alphabet order of
records.

Michael
and this

abbreviation: protein_id
database:  The protein identifier shared by DDBJ/EMBL-bank/GenBank nucleotide

should be

abbreviation: protein_id
database:  The protein identifier shared by DDBJ/EMBL-bank/GenBank nucleotide
 
sequence databases.

(it looks as if the script misses line breaks, since the text is correct at GO)



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