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Draft evidence code ontology

Michael Ashburner (Genetics) ma11 at gen.cam.ac.uk
Thu Feb 26 10:14:42 PST 2004



Folks - here is a very drafty evidence codes ontology (w/out definitions).
Feedback please on all of its particulars.

Michael

!autogenerated-by:     DAG-Edit version 1.409-beta-4
!saved-by:             ma11
!date:                 Thu Feb 26 17:10:28 GMT 2004
!version: $Revision: 1.23 $
!type: @is_a@ is_a is a
$Evidence_Codes_Ontology ; EV:0000000
 @is_a at inferred by curator ; EV:0000001 ; synonym:IC
 @is_a at inferred by electronic annotation ; EV:0000036 ; synonym:IEA
 @is_a at no biological data ; EV:0000035 ; synonym:ND
 @is_a at non-traceable author statement ; EV:0000034 ; synonym:NAS
 @is_a at not_recorded ; EV:0000037 ; synonym:NR
 @is_a at traceable author statement ; EV:0000033 ; synonym:TAS
  @is_a at inferred from direct assay ; EV:0000002 ; synonym:IDA
   @is_a at inferred by cell fractionation ; EV:0000004
   @is_a at inferred by immunofluorescence ; EV:0000007
   @is_a at inferred by physical interaction ; EV:0000021 ; synonym:IPI
    @is_a at inferred from co-purification ; EV:0000022
    @is_a at inferred from ligand binding ; EV:0000023
     @is_a at inferred from 2-hybrid interaction ; EV:0000025
     @is_a at inferred from protein binding ; EV:0000024 @is_a@ inferred by protein 
assay ; EV:0000039
   @is_a at inferred by protein assay ; EV:0000039
    @is_a at inferred by enzyme assay ; EV:0000005
    @is_a at inferred by immunological assay ; EV:0000040
    @is_a at inferred from protein binding ; EV:0000024 @is_a@ inferred from ligand 
binding ; EV:0000023
   @is_a at inferred by reconstitution assay ; EV:0000003
   @is_a at inferred from expression pattern ; EV:0000008 ; synonym:IEP
    @is_a at inferred from protein expression ; EV:0000010
    @is_a at inferred from transcript expression ; EV:0000009
   @is_a at inferred from genetic interaction ; EV:0000011 ; synonym:IGI
    @is_a at inferred from functional complementation ; EV:0000012
    @is_a at inferred from transgenic rescue ; EV:0000013
    @is_a at inferred from transient rescue ; EV:0000038
   @is_a at inferred from mutant phenotype ; EV:0000014 ; synonym:IMP
    @is_a at inferred from anti-sense experiment ; EV:0000018
    @is_a at inferred from ectopic expression ; EV:0000017
    @is_a at inferred from gene mutation ; EV:0000015
    @is_a at inferred from overexpression ; EV:0000016
    @is_a at inferred from RNAi experiment ; EV:0000019
   @is_a at inferred from nucleic acid hybridization ; EV:0000026 @is_a@ inferred 
sequence similarity ; EV:0000041
   @is_a at inferred from specific protein inhibition ; EV:0000020
   @is_a at inferred sequence similarity ; EV:0000041 ; synonym:ISS
    @is_a at inferred from curated BLAST match ; EV:0000030
     @is_a at inferred from curated BLAST match to nucleic acid ; EV:0000032
     @is_a at inferred from curated BLAST match to protein ; EV:0000031
    @is_a at inferred from motif similarity ; EV:0000028
     @is_a at inferred from InterPro motif similarity ; EV:0000029
    @is_a at inferred from nucleic acid hybridization ; EV:0000026 @is_a@ inferred 
from direct assay ; EV:0000002
    @is_a at inferred from structural similarity ; EV:0000027



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