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[GO] Re: [MOBY] Re: GO Xref Abbs now served by MOBY

Midori Harris midori at ebi.ac.uk
Thu Feb 26 10:46:04 PST 2004


I can take care of these (for now I'll do both the namespace db at MOBY
and the old GO.xrf_abbs file; eventually we'll retire the latter).

Midori

On Thu, 26 Feb 2004, Eurie Hong wrote:

> Hi,
> 
> Can you update all the Saccharomyces Genome Database URLs?  All the  
> current URLs are still functional but we'd prefer everyone to use the  
> following:
> 
> For all Saccharomyces Genome Database entries:
> generic_url: http://www.yeastgenome.org/
> 
> For SGD_REF:
> url_syntax:  
> http://db.yeastgenome.org/cgi-bin/SGD/reference/reference.pl?refNo=
> url_example:  
> http://db.yeastgenome.org/cgi-bin/SGD/reference/reference.pl?refNo=19239
> 
> For SGD_LOCUS:
> url_syntax: http://db.yeastgenome.org/cgi-bin/SGD/locus.pl?locus=
> url_example: http://db.yeastgenome.org/cgi-bin/SGD/locus.pl?locus=GAL4
> 
> For SGD:
> url_syntax: http://db.yeastgenome.org/cgi-bin/SGD/locus.pl?sgdid=
> url_example:  
> http://db.yeastgenome.org/cgi-bin/SGD/locus.pl?sgdid=S0006169
> 
> And typos:
> 
> remove extra "c" in Saccharomyces in following entries:
> 
> abbreviation: SGD_ORF
> database:  A namespace describing a Sacccharomyces Open Reading Frame  
> Identifier
> 
> abbreviation: SGD_CHROMOSOME_ID
> database:  A namespace describing a Sacccharomyces Chromosome  
> Identifier (e.g. I, IX, MIT)
> 
> Thanks,
> Eurie
> 
> On Thursday, February 26, 2004, at 08:18  AM, Mark Wilkinson wrote:
> 
> > http://mobycentral.cbr.nrc.ca/cgi-bin/XrefAbbs
> >
> > just click the link above to instantiate the cat... whether it is
> > smiling or not will depend on the parse-test :-)
> >
> > Attached is a saved version of the output from the script above as of
> > this AM.
> >
> > M
> >
> >
> > On Thu, 2004-02-26 at 07:57, Michael Ashburner (Genetics) wrote:
> >> Then can you instantiate the cat & send it (|her|him) to me.
> >> Keep the smile on its (|hers|his) face please.
> >> M
> >>
> >>
> >> --
> >> This message is from the GOFriends moderated mailing list.  A list of  
> >> public
> >> announcements and discussion of the Gene Ontology (GO) project.
> >> Problems with the list?           E-mail:  
> >> owner-gofriends at geneontology.org
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> >> Web:          http://www.geneontology.org/
> > -- 
> > Mark Wilkinson (mwilkinson at mrl.ubc.ca)
> > University of British Columbia iCAPTURE Centre
> > <XrefAbbs.txt>
> 
> *******************************************
> Eurie L. Hong, Ph.D.
> Scientific Curator
> Saccharomyces Genome Database
> Stanford University School of Medicine
> Department of Genetics, Room L317
> Stanford, CA 94305-5120
> 
> http://www.yeastgenome.org/
> *******************************************
> 
> 
> --
> This message is from the GOFriends moderated mailing list.  A list of public
> announcements and discussion of the Gene Ontology (GO) project.
> Problems with the list?           E-mail: owner-gofriends at geneontology.org
> Subscribing   send   "subscribe"   to   gofriends-request at geneontology.org
> Unsubscribing send   "unsubscribe"  to  gofriends-request at geneontology.org
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> 



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