Search Mailing List Archives


Limit search to: Subject & Body Subject Author
Sort by: Reverse Sort
Limit to: All This Week Last Week This Month Last Month
Select Date Range     through    

Draft evidence code ontology

Gillian Millburn (Genetics) gm119 at gen.cam.ac.uk
Fri Feb 27 02:44:44 PST 2004


Hi,

a question about:

@is_a at inferred from gene mutation ; EV:0000015


would this apply to both loss of function and gain of function mutants
made eg. by EMS, X ray etc. i.e. any non-transgenic mutation made in an
organism ? or just loss of function, to contrast with "inferred from
ectopic expression"

as long as it is clear in the definition then that is fine :)

Gillian


> Date: Thu, 26 Feb 2004 18:14:42 +0000 (GMT)
> From: "Michael Ashburner (Genetics)" <ma11 at gen.cam.ac.uk>
> Subject: Draft evidence code ontology
> To: gofriends at genome.stanford.edu 
> 
> Folks - here is a very drafty evidence codes ontology (w/out definitions).
> Feedback please on all of its particulars.
> 
> Michael
> 
> !autogenerated-by:     DAG-Edit version 1.409-beta-4
> !saved-by:             ma11
> !date:                 Thu Feb 26 17:10:28 GMT 2004
> !version: $Revision: 1.23 $
> !type: @is_a@ is_a is a
> $Evidence_Codes_Ontology ; EV:0000000
>  @is_a at inferred by curator ; EV:0000001 ; synonym:IC
>  @is_a at inferred by electronic annotation ; EV:0000036 ; synonym:IEA
>  @is_a at no biological data ; EV:0000035 ; synonym:ND
>  @is_a at non-traceable author statement ; EV:0000034 ; synonym:NAS
>  @is_a at not_recorded ; EV:0000037 ; synonym:NR
>  @is_a at traceable author statement ; EV:0000033 ; synonym:TAS
>   @is_a at inferred from direct assay ; EV:0000002 ; synonym:IDA
>    @is_a at inferred by cell fractionation ; EV:0000004
>    @is_a at inferred by immunofluorescence ; EV:0000007
>    @is_a at inferred by physical interaction ; EV:0000021 ; synonym:IPI
>     @is_a at inferred from co-purification ; EV:0000022
>     @is_a at inferred from ligand binding ; EV:0000023
>      @is_a at inferred from 2-hybrid interaction ; EV:0000025
>      @is_a at inferred from protein binding ; EV:0000024 @is_a@ inferred by 
protein 
> assay ; EV:0000039
>    @is_a at inferred by protein assay ; EV:0000039
>     @is_a at inferred by enzyme assay ; EV:0000005
>     @is_a at inferred by immunological assay ; EV:0000040
>     @is_a at inferred from protein binding ; EV:0000024 @is_a@ inferred from 
ligand 
> binding ; EV:0000023
>    @is_a at inferred by reconstitution assay ; EV:0000003
>    @is_a at inferred from expression pattern ; EV:0000008 ; synonym:IEP
>     @is_a at inferred from protein expression ; EV:0000010
>     @is_a at inferred from transcript expression ; EV:0000009
>    @is_a at inferred from genetic interaction ; EV:0000011 ; synonym:IGI
>     @is_a at inferred from functional complementation ; EV:0000012
>     @is_a at inferred from transgenic rescue ; EV:0000013
>     @is_a at inferred from transient rescue ; EV:0000038
>    @is_a at inferred from mutant phenotype ; EV:0000014 ; synonym:IMP
>     @is_a at inferred from anti-sense experiment ; EV:0000018
>     @is_a at inferred from ectopic expression ; EV:0000017
>     @is_a at inferred from gene mutation ; EV:0000015
>     @is_a at inferred from overexpression ; EV:0000016
>     @is_a at inferred from RNAi experiment ; EV:0000019
>    @is_a at inferred from nucleic acid hybridization ; EV:0000026 @is_a@ inferred 
> sequence similarity ; EV:0000041
>    @is_a at inferred from specific protein inhibition ; EV:0000020
>    @is_a at inferred sequence similarity ; EV:0000041 ; synonym:ISS
>     @is_a at inferred from curated BLAST match ; EV:0000030
>      @is_a at inferred from curated BLAST match to nucleic acid ; EV:0000032
>      @is_a at inferred from curated BLAST match to protein ; EV:0000031
>     @is_a at inferred from motif similarity ; EV:0000028
>      @is_a at inferred from InterPro motif similarity ; EV:0000029
>     @is_a at inferred from nucleic acid hybridization ; EV:0000026 @is_a@ 
inferred 
> from direct assay ; EV:0000002
>     @is_a at inferred from structural similarity ; EV:0000027

--
This message is from the GOFriends moderated mailing list.  A list of public
announcements and discussion of the Gene Ontology (GO) project.
Problems with the list?           E-mail: owner-gofriends at geneontology.org
Subscribing   send   "subscribe"   to   gofriends-request at geneontology.org
Unsubscribing send   "unsubscribe"  to  gofriends-request at geneontology.org
Web:          http://www.geneontology.org/



More information about the go-friends mailing list