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Saccharomyces GFF3 file released

Stan Dong qdong at genome.Stanford.EDU
Wed Jun 2 17:08:06 PDT 2004


Hello,

SGD has just released a GFF3 file for the Saccharomyces cerevisiae
reference genome. This GFF3 file provides features mapped to the
genome, chromosomal sequences, gene product names and aliases, gene
descriptions and more.  This file is fully compatible with the current
GFF3 specification, including discussions at the recent GMOD meeting.
See the document at http://song.sourceforge.net/gff3-jan04.shtml for
the latest specification. Upon our testing, with assistance from Scott
Cain of GMOD, the file has not errors with the GBrowse and Chado
loading scripts.  GO annotations for each S. cerevisiae gene product
are represented in the last column as 'Ontology_term=A_list_of_GOID'.
The file is updated once a week from the SGD database and available for
download from the SGD Anonymous FTP site.

ftp://ftp.yeastgenome.org/yeast/data_download/chromosomal_feature/saccharomyces_cerevisiae.gff

Feedback and comments are requested.

cheers,
-Stan

--------------------------------------------------
Stan Dong, Ph.D.
Senior Scientific Programmer
Saccharomyces Genome Database
M339, Department of Genetics
Stanford University Medical Center
Stanford, CA 94305-5120
Phone: 650-725-8956, Fax: 650-725-1534
email: qdong at genome.stanford.edu
http://www.yeastgenome.org/
--------------------------------------------------

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