Search Mailing List Archives

Limit search to: Subject & Body Subject Author
Sort by: Reverse Sort
Limit to: All This Week Last Week This Month Last Month
Select Date Range     through    

Drawing GO hierarchical trees

Nigam Shah nigam at
Tue Jun 22 07:20:32 PDT 2004


Given a list of GO-ids belonging to any one category
(processs,function,component), is there an easy way to draw the (HTML)
hierarchical tree for those terms? 

I need to draw a tree (using a perl script) for GO terms deemed
'significant' for a group of genes. We have a local installation of GO to
get the parents of each term and I was wondering if there is a module out
there that would let me draw the trees without reinventing the wheel. I am
sure people must have done this many times before. So if some one can
provide tips/perl code/modules to do that it would be fabulous. Thanks in

Nigam Shah.

Nigam Shah
Graduate Fellow, 
Huck Institute for Life Sciences,
Penn State University.

This message is from the GOFriends moderated mailing list.  A list of public
announcements and discussion of the Gene Ontology (GO) project.
Problems with the list?           E-mail: owner-gofriends at
Subscribing   send   "subscribe"   to   gofriends-request at
Unsubscribing send   "unsubscribe"  to  gofriends-request at

More information about the go-friends mailing list