Search Mailing List Archives


Limit search to: Subject & Body Subject Author
Sort by: Reverse Sort
Limit to: All This Week Last Week This Month Last Month
Select Date Range     through    

Drawing GO hierarchical trees

Suzanna Lewis suzi at fruitfly.org
Tue Jun 22 08:14:30 PDT 2004


You can also do this with AmiGO. Just click where
it says graphical view (color changing and orientation
changing are possible). Like QuickGO, there are some
limits on how many terms you may reasonably expect
to see in the drawn view.

-S

Nigam Shah wrote:
> Hi!
> 
> Given a list of GO-ids belonging to any one category
> (processs,function,component), is there an easy way to draw the (HTML)
> hierarchical tree for those terms? 
> 
> I need to draw a tree (using a perl script) for GO terms deemed
> 'significant' for a group of genes. We have a local installation of GO to
> get the parents of each term and I was wondering if there is a module out
> there that would let me draw the trees without reinventing the wheel. I am
> sure people must have done this many times before. So if some one can
> provide tips/perl code/modules to do that it would be fabulous. Thanks in
> advance!
> 
> Regards,
> Nigam Shah.
> 
> Nigam Shah
> Graduate Fellow, 
> Huck Institute for Life Sciences,
> Penn State University.
> Ph:(814)863-5720
> Web: www.personal.psu.edu/nhs109/
> 
> 
> --
> This message is from the GOFriends moderated mailing list.  A list of public
> announcements and discussion of the Gene Ontology (GO) project.
> Problems with the list?           E-mail: owner-gofriends at geneontology.org
> Subscribing   send   "subscribe"   to   gofriends-request at geneontology.org
> Unsubscribing send   "unsubscribe"  to  gofriends-request at geneontology.org
> Web:          http://www.geneontology.org/


--
This message is from the GOFriends moderated mailing list.  A list of public
announcements and discussion of the Gene Ontology (GO) project.
Problems with the list?           E-mail: owner-gofriends at geneontology.org
Subscribing   send   "subscribe"   to   gofriends-request at geneontology.org
Unsubscribing send   "unsubscribe"  to  gofriends-request at geneontology.org
Web:          http://www.geneontology.org/



More information about the go-friends mailing list