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Drawing GO hierarchical trees

John Day-Richter john.richter at aya.yale.edu
Tue Jun 22 10:35:21 PDT 2004


I hate to be boring, but you can ALSO do it with the DAG-Edit GraphViewer 
plugin in the latest beta release. It requires the GraphViz software to be 
installed.

	-John

On Tuesday 22 June 2004 08:14, Suzanna Lewis wrote:
> You can also do this with AmiGO. Just click where
> it says graphical view (color changing and orientation
> changing are possible). Like QuickGO, there are some
> limits on how many terms you may reasonably expect
> to see in the drawn view.
>
> -S
>
> Nigam Shah wrote:
> > Hi!
> >
> > Given a list of GO-ids belonging to any one category
> > (processs,function,component), is there an easy way to draw the (HTML)
> > hierarchical tree for those terms?
> >
> > I need to draw a tree (using a perl script) for GO terms deemed
> > 'significant' for a group of genes. We have a local installation of GO to
> > get the parents of each term and I was wondering if there is a module out
> > there that would let me draw the trees without reinventing the wheel. I
> > am sure people must have done this many times before. So if some one can
> > provide tips/perl code/modules to do that it would be fabulous. Thanks in
> > advance!
> >
> > Regards,
> > Nigam Shah.
> >
> > Nigam Shah
> > Graduate Fellow,
> > Huck Institute for Life Sciences,
> > Penn State University.
> > Ph:(814)863-5720
> > Web: www.personal.psu.edu/nhs109/
> >
> >
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--
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