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[Go-database] TIGR database annotations to GO

J Clark jclark at ebi.ac.uk
Fri Mar 26 06:49:50 PST 2004


Hi Mike,

Would you like to have the tool listed on the GO website?

http://www.geneontology.org/GO.tools.add.html

Thanks,

Jen


Mike Bada wrote:

> Hello Anand and GO people,
> 
> Here at the University of Manchester, we're working on a project called 
> the Gene Ontology Annotation Tool (GOAT), which aims to guide users in 
> the annotation of gene products with GO terms by suggesting the GO terms 
> that are most likely to be relevant based on the information (other GO 
> terms and gene-product type) that the user has already entered for a 
> given gene product.  The terms suggested by the tool are mostly 
> determined by relying upon a large store of GO-term-to-GO-term 
> associations that we have mined from GOA and represented in a 
> description-logic-based formalism.  If you're further interested, there 
> will be a GOAT paper appearing in the June issue of SIGMOD Record, which 
> will be a special issue on data engineering in the life sciences.  Or 
> you can check out the project's Web site at http://goat.man.ac.uk (which 
> right now has some outdated information but which I'll update over the 
> weekend).
> 
> Cheers,
> Mike
> 
> At 05:41 PM 3/22/2004 +0100, Anand Kumar wrote:
> 
>> Hello,
>>
>> I am using annotations of TIGR gene products present within the 
>> association table of GO to find association between GO terms.
>> Can someone please send me a write-up in few lines which describes 
>> which kinds of gene products present within TIGR databases are present 
>> within association table of GO database.
>>
>> Is someone doing a related work?
>>
>> Kind Regards,
>> Anand.
>>
>> Anand Kumar MBBS, PhD
>> IFOMIS
>> Faculty of Medicine
>> University of Leipzig
>> Härtelstraße 16-18
>> 04107 Leipzig
>> Germany
>> http://www.uni-leipzig.de/~akumar/
>>
>>
>>
>>
>>
>> _______________________________________________
>> Go-database mailing list
>> Go-database at mail.fruitfly.org
>> http://mail.fruitfly.org/mailman/listinfo/go-database
> 
> 
> _______________________________________________
> Go-database mailing list
> Go-database at mail.fruitfly.org
> http://mail.fruitfly.org/mailman/listinfo/go-database
> 

-- 
EMBL - European Bioinformatics Institute,
Gene Ontology Consortium,
and Wolfson College, Cambridge.
http://www.ebi.ac.uk/~jclark/


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