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reg the GO terms
Mike Cherry
cherry at genome.Stanford.EDU
Sat Mar 12 22:18:54 PST 2005
V,
Not all protein sequences have GOIDs. Of course many genes have no
predicted function, or a particular protein sequence in one of the
databases may not have been connected to a gene that has been
annotated. There are several methods to retrieve GO associations. One
simple method using Perl is provided by the SeqHound API from BIND
(http://seqhound.blueprint.org).
SeqHound has a routine called SHoundGOIDFromGi that will retrieve the
GOIDs for a particular GI. As mentioned above many GIs do not have
GOIDs assigned. SeqHound has another routine called
SHoundGOIDFromRedundantGi that will first check for GOID assigned to
the GI, if none are assigned it will search all proteins with the same
sequence for GOIDs.
I'm sending you a list of GOIDs for the GIs you listed in a separate
email.
-Mike
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