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March 15 2005: GOA release

Daniel Barrell dbarrell at ebi.ac.uk
Tue Mar 15 09:05:42 PST 2005


March 15 2005: GOA releases.
==============================

GOA (GO Annotation at EBI) is a project run by the European
Bioinformatics Institute that aims to provide assignments of gene
products to the Gene Ontology (GO) resource. The project announces
the 27th release of all GO annotations that exist in UniProt
(GOA-UniProt) as well as an 29th release of annotation for the
Swiss-Prot/TrEMBL/Ensembl/RefSeq non-redundant human proteome set
(GOA-Human) and 15th release of GOA mouse and rat and a 18th release of
our PDB data set (see the news item below).  This release also sees the 
3rd release of GOA UniProt
Proteome sets and the 2nd releases of GOA arabidopsis and zebrafish.


The data can be obtained via:

          EBI FTP: ftp://ftp.ebi.ac.uk/pub/databases/GO/goa/

          EBI SRS: http://srs.ebi.ac.uk. Search GOA data library *

          GO FTP: ftp://ftp.geneontology.org/pub/go/gene-associations/

          GO CVS: http://www.geneontology.org/GO.CVS.help.html

For further information read: http://www.ebi.ac.uk/GOA
or contact goa at ebi.ac.uk.


** NEWS **

The 'gene_association.goa_pdb' gene association file provided by the GOA 
group at the EBI contains GO assignments to PDB entries. As of this 
month this file has been altered so that PDB entries are only assigned 
GO terms based on matched InterPro domain ids.   This file no longer 
contains annotations from sources where GO terms have been assigned to 
entire UniProt protein accessions (i.e. from GOA:manual, GOA:SPKW, 
GOA:SPEC or GOA:HAMAP sources). This change has been made to avoid 
assigning GO terms to PDB chains where some terms might only be correct 
for the corresponding whole protein.


**********

Evelyn Camon & Daniel Barrell
(UniProt GOA Project)


* Updated tonight











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