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Pie Chart view of Gene Ontology percentages

Suzanna Lewis suzi at fruitfly.org
Fri May 20 09:39:08 PDT 2005


Given that you can get the data then you might be able
to use the pie-chart generating code that is a part of AmiGO
as another alternative. I think it is a fairly general chunk of
code.

On May 17, 2005, at 4:54 PM, Nathan Salomonis wrote:

> Greetings,
>
> I was wondering if anyone new of a program that will take an input set 
> of
> genes, for example a whole dataset, that is divided into groups (e.g.
> clusters) and not only identify over-represented GO terms in each 
> cluster
> put generate a graphical pie chart showing the percentages of high 
> level GO
> terms aligning with that cluster? Several genome annotation papers 
> display
> this type of output; however I'm not sure if there is a program that
> generates this type of display.
>
> Thanks,
> Nathan Salomonis
> University of California, San Francisco
> Pharmaceutical Sciences and Pharmacogenomics
>
> GenMAPP (Gene Map Annotator and Pathway Profiler)
> http://www.genmapp.org
>
>
>
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